SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15578

Length: 323 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15578
TGTCAGATTTCACCGAGAGTTGGTTTGCTATGGGAGTACTGGTTCTGATGGTTGTGTCAACGAATGCGTTTTTGGTGGATCTGACTTTGGTGGAGGATGCCGTGGCCAAAGGAGCTGTTTGTTTAGATGGAAGCCCACCTGGCTACCATCTTAGCAAGGGATTTGGATCTGGAGTAAATAACTGGCTTGTTCACTTTGAGGGGGGATCATGGTGCAACAACATTACAACATGTTCTGCACGGACGAAAACTCGCCTGGGTTCATCTAAATACATGAGTAAACAAGTACAGTTCTCGGGCCTCTTAGGTAACAGCAAAGACATT

Ace file of the UniGene biog3_v1.0_unigene15578 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3960	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	PAE n=1 Tax=Litchi chinensis RepID=B3V945_LITCN	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein notum homolog	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Carboxylesterase.	EC:3.1.1.1	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	78%
Blast2go	Drug metabolism - other enzymes	00983	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	carboxylesterase activity	GO:0004091	Molecular Function	0.0	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pectinacetylesterase	IPR004963	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUX2

Fln msg: Distance to subject end: 286 aas, atg_distance in limit (1-15): atg_distance = 7, your sequence is shorter than subject: 98 - 399

Fln protein: MGVLVLMVVSTNAFLVDLTLVEDAVAKGAVCLDGSPPGYHLSKGFGSGVNNWLVHFEGGSWCNNITTCSARTKTRLGSSKYMSKQVQFSGLLGNSKDI

Protein Length: 99

Fln nts: TGTCAGATTTCACCGAGAGTTGGTTTGCT_-_ATGGGAGTACTGGTTCTGATGGTTGTGTCAACGAATGCGTTTTTGGTGGATCTGACTTTGGTGGAGGATGCCGTGGCCAAAGGAGCTGTTTGTTTAGATGGAAGCCCACCTGGCTACCATCTTAGCAAGGGATTTGGATCTGGAGTAAATAACTGGCTTGTTCACTTTGAGGGGGGATCATGGTGCAACAACATTACAACATGTTCTGCACGGACGAAAACTCGCCTGGGTTCATCTAAATACATGAGTAAACAAGTACAGTTCTCGGGCCTCTTAGGTAACAGCAAAGACATT

Fln Alignment:

biogeco3_mira_c11193___SDFTESWFAMGVLVLMVVSTNAFLVDLTLVEDAVAKGAVCLDGSPPGYHLSKGFGSGVNNWLVHFEGGSWCNNITTCSARTKTRLGSSKYMSKQVQFSGLLGNSK
A9NUX2__________________SGFTERWFAMVVLVLMVVSANAFLVDLTLVEDAVAKGAVCLDGSPPGYHLSRGFGSGVNNWLVHFEGGSWCNNVTTCSARTKTRLGSSKYMIKQVDFSGLLGNNK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
88		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain