SustainPineDB

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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15553

Length: 422 nt

UniGene Fasta

>biog3_v1.0_unigene15553
AATGTATGAAGGACAAGATCGAGAATCAATGGGTGTCTCTGTTAGATGTCATTGGCCAGAACGTCCTTCTGGAACTAGTCAGTGTTGACATCGATCCAGAGACAACTAGTGGCAAGAGAAGCAAAGAATCTGCTTTGAAGGGCTGGCTGCTGCAGACTGCCCGTGAAGATAACATAATGGAATGCACTGCAAATTTTACAGTAAGCGCTGACTTTGGTTGGCCGGGAGCTATTTTAGTTACCAATCATCACGACAAAGAAATCTTTTTAGAATCCATTGTAGTGGAAGGGTTCGACAGCGAGCCGATCTACTTCCCCTGCCACTCTTGGGTTCATTCAAAGAAGGATAATCCCGAGAAAAGAATCTTCTTCAGCAATCAGAAGGACCTGACAGACAAGCGTGGGGATGGCAAAGGTGAACGT

Ace file of the UniGene biog3_v1.0_unigene15553

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28774	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Picea sitchensis RepID=C0PT31_PICSI	-	-	89%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	protein	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT31

Fln msg: Distance to subject end: 666 aas, your sequence is shorter than subject: 140 - 924

Fln protein: CMKDKIENQWVSLLDVIGQNVLLELVSVDIDPETTSGKRSKESALKGWLLQTAREDNIMECTANFTVSADFGWPGAILVTNHHDKEIFLESIVVEGFDSEPIYFPCHSWVHSKKDNPEKRIFFSNQKDLTDKRGDGKGER

Protein Length: 141

Fln nts: AATGTATGAAGGACAAGATCGAGAATCAATGGGTGTCTCTGTTAGATGTCATTGGCCAGAACGTCCTTCTGGAACTAGTCAGTGTTGACATCGATCCAGAGACAACTAGTGGCAAGAGAAGCAAAGAATCTGCTTTGAAGGGCTGGCTGCTGCAGACTGCCCGTGAAGATAACATAATGGAATGCACTGCAAATTTTACAGTAAGCGCTGACTTTGGTTGGCCGGGAGCTATTTTAGTTACCAATCATCACGACAAAGAAATCTTTTTAGAATCCATTGTAGTGGAAGGGTTCGACAGCGAGCCGATCTACTTCCCCTGCCACTCTTGGGTTCATTCAAAGAAGGATAATCCCGAGAAAAGAATCTTCTTCAGCAATCAGAAGGACCTGACAGACAAGCGTGGGGATGGCAAAGGTGAACGT

Fln Alignment:

biogeco3_mira_c11099___MKDKIENQWVSLLDVIGQNVLLELVSVDIDPETTSGKRSKESALKGWLLQTAREDNIMECTANFTVSADFGWPGAILVTNHHDKEIFLESIVVEGFDSEPIYFPCHSWVHSKKDNPEKRIFFSN----------------QKDLTDKRGDGKGER
C0PT31__________________MKDKIENQWVSLLDVIGQNVLLELVSVDIDPETSCGKRSKESALKGWLLQAAREDNMMECTANFIVSTDFGSPGAILVTNQHDKEIFLESIFVEGFGSEPIYFPCHSWVHAKKYNPEKRIFFSNQTYLPSKTPDGLEDLRQKDLKDKRGDGKGER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain