SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15538

Length: 335 nt

UniGene Fasta

>biog3_v1.0_unigene15538
AATGTGTTCGTATTTTCCGGGTTTGACTCATCCTGGTCTTATTGGAACTGCACCTTCAAAAGAACTCCTTGATATATGGAATGCAAGGGAGGCATCCCTTGTAAATGGTAGTGTACAGCCTTCTACATTGTGTGATATCTTGCACCAGCGGCCACTTGCCAATTTACCAACTCCCAAAAGTTCCCTTCTTGGATTGGTGGAAAAGGGGACAGCTAATTGGGAAAGAATTGCAGCTGAAGCTGCAAGAACCATTCCTGGCCGCGAGAATGGTGGAAATTGTGACATAAAAAATCTCAGCAAGGGCTCTAAAGTGTACCTCCCTGTTTTTATACATT

Ace file of the UniGene biog3_v1.0_unigene15538

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2262	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Putative formamidase n=1 Tax=Arabidopsis thaliana RepID=Q94CA8_ARATH	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	formamidase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Formamidase.	EC:3.5.1.49	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		0.0	85%
Blast2go	Nitrogen metabolism	00910		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	85%
Blast2go	formamidase activity	GO:0004328	Molecular Function	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Acetamidase/Formamidase	IPR004304	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NM92

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 111 - 309

Fln protein: MCSYFPGLTHPGLIGTAPSKELLDIWNAREASLVNGSVQPSTLCDILHQRPLANLPTPKSSLLGLVEKGTANWERIAAEAARTIPGRENGGNCDIKNLSKGSKVYLPVFIH

Protein Length: 112

Fln nts: AATGTGTTCGTATTTTCCGGGTTTGACTCATCCTGGTCTTATTGGAACTGCACCTTCAAAAGAACTCCTTGATATATGGAATGCAAGGGAGGCATCCCTTGTAAATGGTAGTGTACAGCCTTCTACATTGTGTGATATCTTGCACCAGCGGCCACTTGCCAATTTACCAACTCCCAAAAGTTCCCTTCTTGGATTGGTGGAAAAGGGGACAGCTAATTGGGAAAGAATTGCAGCTGAAGCTGCAAGAACCATTCCTGGCCGCGAGAATGGTGGAAATTGTGACATAAAAAATCTCAGCAAGGGCTCTAAAGTGTACCTCCCTGTTTTTATACATT

Fln Alignment:

biogeco3_mira_c11059___FPGLTHPGLIGTAPSKELLDIWNAREASLVNGSVQPSTLCDILHQRPLANLPTPKSSLLGLVEKGTANWERIAAEAARTIPGRENGGNCDIKNLSKGSKVYLPVFI
A9NM92__________________FPGLIHPGLIGTAPSKELLDIWNAREASLVNGSVQPPTLCDILHQRPLANLPTPKGSLLGLVEKGTANWERIADEAARTIPGRENGGNCDIKNLSKGSKVYLPVFI

SNPs (tot: 3)

Position	A %	C %	T %	Probability
116	33	66		0.997452
117	66		33	0.997452
119		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain