SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15523

Length: 219 nt

UniGene Fasta

>biog3_v1.0_unigene15523
AATGTATGGAAATTGTTGCTAGGAAAATTCAGTTACGATAATGGACCATGAACGGGGAACTAGGGAGGAGGAATTCACTGAGGATCCAATGACTGTGCCTCCACGCATAATGTCAAACTGGAAACCAGTGCTGACTGATGAGCTTCCCATTGCTTTCTGTGGTGGATGGATTGGATATTTTTCATATGATACTGTGAGGTATGTAGAGAAGAGAAAGTT

Ace file of the UniGene biog3_v1.0_unigene15523

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7914	1/3
SustainPine v2.0	sp_v2.0_unigene32724	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Anthranilate synthase alpha subunit n=1 Tax=Catharanthus roseus RepID=Q9AW95_CATRO	-	-	56%
FL-Next	sp=Anthranilate synthase component I-2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	65%
Blast2go	anthranilate synthase component i- chloroplastic-like	-	-	65%

Source	InterPros	Term	Type	Identity
Sma3	Anthranilate synthase component I, PabB-like	IPR005256	-	-
Sma3	ADC synthase	IPR005801	-	-
Sma3	Anthranilate synthase component I, N-terminal	IPR006805	-	-
Sma3	Chorismate binding, C-terminal	IPR015890	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P32069

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 398 aas, your sequence is shorter than subject: 72 - 621

Fln protein: MYGNCC*ENSVTIMDHERGTREEEFTEDPMTVPPRIMSNWKPVLTDELPIAFCGGWIGYFSYDTVRYVEKRK

Protein Length: 73

Fln nts: AATGTATGGAAATTGTTGCTAGGAAAATTCAGTTACGATAATGGACCATGAACGGGGAACTAGGGAGGAGGAATTCACTGAGGATCCAATGACTGTGCCTCCACGCATAATGTCAAACTGGAAACCAGTGCTGACTGATGAGCTTCCCATTGCTTTCTGTGGTGGATGGATTGGATATTTTTCATATGATACTGTGAGGTATGTAGAGAAGAGAAAGTT

Fln Alignment:

biogeco3_mira_c11011___NSVTIMDHERGTREEEFTEDPMTVPPRIMSNWKPVLTDELPIAFCGGWIGYFSYDTVRYVEKRK
P32069__________________NVVTVMDHGASLRTEEEVDDPMMVPQKIMEEWNPQGIDELPEAFCGGWVGYFSYDTVRYVEKKK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
33	66		33		0.997452
34			66	33	0.997452
120		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain