SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15511

Length: 498 nt

UniGene Fasta

>biog3_v1.0_unigene15511
CGCTTCTCTGTTCGATCAAAGGCTTCAGAAGGCGCTACCCCAGCAAAGCGGAATAGCATACTTTGTAATGATTGTGATGGTAATGGGATGGTTCTTTGTTCACAATGCAATGGGAACGGTGTAAATTCTGTAGACCACTTTAATGGCCGGTTCAAGGCAGGTGCAACTTGTTGGCTCTGTAGAGGTAAAAGGGAGATGTTGTGTGGAAATTGTAATGGTGCAGGCTTTATGGGAGGGTTCATGACCACGCCAGATTCCTAAAAATGTTTTCTTTTAATGTTGGGAAGTAATGCTTATTTCGAGCTTTCTTTTTGCGAGATGTACAGATTTAGTTTTTACATTATTTCATTATTTAGATATTCAAACAATAACAAAAAATTGACGGTGGTAGAATATTTAAAACCTCGTAAAAATTGAATGTCAGTATGGTATGAAGATCAAATGTAAGCTATAAGTAGTTGTGACTGTGCAATCTAATGATGTTACATCTTACATCTT

Ace file of the UniGene biog3_v1.0_unigene15511

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6569	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os06g0332800 protein n=3 Tax=Oryza sativa RepID=Q69WH2_ORYSJ	-	-	4.0e-31	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	bundle sheath defective protein	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	78%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	78%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	78%
Blast2go	plastid	GO:0009536	Cellular Component	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLC6

Fln msg: your sequence is shorter than subject: 87 - 143

Fln protein: RFSVRSKASEGATPAKRNSILCNDCDGNGMVLCSQCNGNGVNSVDHFNGRFKAGATCWLCRGKREMLCGNCNGAGFMGGFMTTPDS*

Protein Length: 88

Fln nts: CGCTTCTCTGTTCGATCAAAGGCTTCAGAAGGCGCTACCCCAGCAAAGCGGAATAGCATACTTTGTAATGATTGTGATGGTAATGGGATGGTTCTTTGTTCACAATGCAATGGGAACGGTGTAAATTCTGTAGACCACTTTAATGGCCGGTTCAAGGCAGGTGCAACTTGTTGGCTCTGTAGAGGTAAAAGGGAGATGTTGTGTGGAAATTGTAATGGTGCAGGCTTTATGGGAGGGTTCATGACCACGCCAGATTCCTAA___AAATGTTTTCTTTTAATGTTGGGAAGTAATGCTTATTTCGAGCTTTCTTTTTGCGAGATGTACAGATTTAGTTTTTACATTATTTCATTATTTAGATATTCAAACAATAACAAAAAATTGACGGTGGTAGAATATTTAAAACCTCGTAAAAATTGAATGTCAGTATGGTATGAAGATCAAATGTAAGCTATAAGTAGTTGTGACTGTGCAATCTAATGATGTTACATCTTACATCTT

Fln Alignment:

biogeco3_mira_c10976___RFSVRSKASEGATPAKRNSILCNDCDGNGMVLCSQCNGNGVNSVDHFNGRFKAGATCWLCRGKREMLCGNCNGAGFMGGFMTTPD
A9NLC6__________________RFSVRTKASEGATPAKKNSILCPDCDGNGMVACSQCKGNGVNSVDHFNGRFKAGATCWLCRGKRETLCGNCSGAGFMGGFMTTPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain