SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15494

Length: 350 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15494
TTGCAATGCAGTTGGATCAGAACATCCTGTGAACGATGCTCCTGGTCCTGCAATAGGGCAGCAAATTGAAGAATCTCCAGTAGCATTTCACAAAAGAAATGCCAAAAAGATTAAAAGGCAATCCAAGAATAATGCAACTACTAGTAATTGTGATGTTCACGAGGGAGATCAAATTATATCCAAGGGGATTGAAGGTAACAGAAAGAACAAGAAAAAATCTGAATATCAACGTCGACAAAGTCTTGCAGGGGCAGGAACTTTATGGAAAAGCGGGGTAAGACGGAGTACAAGAATAAGATCAAGACCTTTAGAGTATTGGAGAGGCGAAAGGTTCTTATATGGTCGACATT

Ace file of the UniGene biog3_v1.0_unigene15494 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14817	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	centromere protein C [Arabidopsis thaliana] gb\|AAU04629.1\| CENP-C [Arabidopsis thaliana] gb\|AEE29346.1\| centromere protein C [Arabidopsis thaliana]	-	-	2.0e-26	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	69%
Blast2go	cenp-c	-	-	1.8712e-29	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	chromosome, centromeric region	GO:0000775	Cellular Component	1.8712e-29	63%
Blast2go	nucleus	GO:0005634	Cellular Component	1.8712e-29	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipocalin	IPR002345	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7U0P0

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 116 - 899

Fln protein: CNAVGSEHPVNDAPGPAIGQQIEESPVAFHKRNAKKIKRQSKNNATTSNCDVHEGDQIISKGIEGNRKNKKKSEYQRRQSLAGAGTLWKSGVRRSTRIRSRPLEYWRGERFLYGRH

Protein Length: 117

Fln nts: TTGCAATGCAGTTGGATCAGAACATCCTGTGAACGATGCTCCTGGTCCTGCAATAGGGCAGCAAATTGAAGAATCTCCAGTAGCATTTCACAAAAGAAATGCCAAAAAGATTAAAAGGCAATCCAAGAATAATGCAACTACTAGTAATTGTGATGTTCACGAGGGAGATCAAATTATATCCAAGGGGATTGAAGGTAACAGAAAGAACAAGAAAAAATCTGAATATCAACGTCGACAAAGTCTTGCAGGGGCAGGAACTTTATGGAAAAGCGGGGTAAGACGGAGTACAAGAATAAGATCAAGACCTTTAGAGTATTGGAGAGGCGAAAGGTTCTTATATGGTCGACATT

Fln Alignment:

biogeco3_mira_c10931___SKGIEGNRKNKKKSEYQRRQSLAGAGTLWKSGVRRSTRIRSRPLEYWRGERFLYGR
D7U0P0__________________SKAKTPPRRERKRKEISGRQSLAGAGTLWSSGVRRSTRIKMRPLEYWKGERFLYGR

SNPs (tot: 3)

Position	A %	C %	T %	Probability
157		66	33	0.997476
165		66	33	0.997457
210	66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain