SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15475

Length: 304 nt

UniGene Fasta

>biog3_v1.0_unigene15475
AATGTGTAAACATGATTATGGGAAGCATGATGGCTTCATTCTCCGAGGGCATGATTCTTGGTCAGAAAATGGGATTAGATCCTGGTGTTTTAGTTGAGGTAATATCCCAGGGTGCAATAAGTGCACCAATGTATTCGATGAAGGGCCCCTCTATGATAAAAGCCAGTTATGCTTCAGCATTCCCTCTCAAGCATCAACAAAAGGATTTGCGACTTGCATTAGCTATGGCTGAAGAAGTGTCACAGCCTATTCCAGTTGCTGCAGCTGCAAATGAACTATACAAGGTAGCAAAAGCTCATGGTCT

Ace file of the UniGene biog3_v1.0_unigene15475

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene338	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	[I] COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	oxidoreductase glyr1-like	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	3-hydroxyisobutyrate dehydrogenase.	EC:1.1.1.31	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	Glyoxylate reductase (NADP(+)).	EC:1.1.1.79	-	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyruvate metabolism	00620		84%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go		EC:1.1.1.6-	-	84%
Blast2go	Phosphogluconate dehydrogenase (decarboxylating).	EC:1.1.1.44	-	84%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	84%
Blast2go	Glutathione metabolism	00480	84%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	pentose-phosphate shunt	GO:0006098	Biological Process	84%
Blast2go	valine metabolic process	GO:0006573	Biological Process	84%
Blast2go	3-hydroxyisobutyrate dehydrogenase activity	GO:0008442	Molecular Function	84%
Blast2go	glyoxylate reductase (NADP) activity	GO:0030267	Molecular Function	84%
Blast2go	2-hydroxy-3-oxopropionate reductase activity	GO:0008679	Molecular Function	84%
Blast2go	phosphogluconate dehydrogenase (decarboxylating) activity	GO:0004616	Molecular Function	84%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	84%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Fibrillarin	IPR000692	-	-
Sma3	3-hydroxyisobutyrate dehydrogenase-related, conserved site	IPR002204	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	-
Sma3		IPR006183	-	-
Sma3	Protein of unknown function DUF914, eukaryotic	IPR009262	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	3-hydroxyacid dehydrogenase/reductase	IPR015815	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNG8

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 100 - 293

Fln protein: CVNMIMGSMMASFSEGMILGQKMGLDPGVLVEVISQGAISAPMYSMKGPSMIKASYASAFPLKHQQKDLRLALAMAEEVSQPIPVAAAANELYKVAKAHG

Protein Length: 101

Fln nts: AATGTGTAAACATGATTATGGGAAGCATGATGGCTTCATTCTCCGAGGGCATGATTCTTGGTCAGAAAATGGGATTAGATCCTGGTGTTTTAGTTGAGGTAATATCCCAGGGTGCAATAAGTGCACCAATGTATTCGATGAAGGGCCCCTCTATGATAAAAGCCAGTTATGCTTCAGCATTCCCTCTCAAGCATCAACAAAAGGATTTGCGACTTGCATTAGCTATGGCTGAAGAAGTGTCACAGCCTATTCCAGTTGCTGCAGCTGCAAATGAACTATACAAGGTAGCAAAAGCTCATGGTCT

Fln Alignment:

biogeco3_mira_c10889___VNMIMGSMMASFSEGMILGQKMGLDPGVLVEVISQGAISAPMYSMKGPSMIKASYASAFPLKHQQKDLRLALAMAEEVSQPIPVAAAANELYK
A9NNG8__________________VNMIMGSMITAFSEGLALADKSGLSQTTLLDVLELGAIANPMFKLKGPAMIQEKFPTAFPLKHQQKDMRLALALGDEVEVSMPVAAAANEAFK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain