SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15463

Length: 302 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15463
GTATGTAAATGGACAACCAAATGAGGATGGGAAAATGAGAGACCTAAGAATTGCTCGAAATTTCACAGTGCATAGTGTTGTAAAATGGCTTGATAAACAGTTCGTTAAGTATCCAAAGTTGAGGGTCTTCATGAGAACGCTATCTCCTAGACATTTCTTTAATGGGGATTGGGACTCAGGAGGCCGTTGCGATAACACCAAACTGTTGTCTGAAAGTCACAATGTTTCTCACATTCGAGCTAATGATCCAGCTGTTGAGAGTGCTGTGAGGGGAACAAGGGTTGAATGTTTAGAGATACATT

Ace file of the UniGene biog3_v1.0_unigene15463 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14669	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	WS00752.C21_J13 WS-PS-N-A-8 Picea glauca cDNA clone WS00752_J13 3, mRNA sequence.	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	uncharacterized protein loc100780117	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR004253	-	0.0	-
Sma3	Cas1p 10 TM acyl transferase domain	IPR012419	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUP3

Fln msg: Distance to subject end: 57 aas, your sequence is shorter than subject: 100 - 390

Fln protein: YVNGQPNEDGKMRDLRIARNFTVHSVVKWLDKQFVKYPKLRVFMRTLSPRHFFNGDWDSGGRCDNTKLLSESHNVSHIRANDPAVESAVRGTRVECLEIH

Protein Length: 101

Fln nts: GTATGTAAATGGACAACCAAATGAGGATGGGAAAATGAGAGACCTAAGAATTGCTCGAAATTTCACAGTGCATAGTGTTGTAAAATGGCTTGATAAACAGTTCGTTAAGTATCCAAAGTTGAGGGTCTTCATGAGAACGCTATCTCCTAGACATTTCTTTAATGGGGATTGGGACTCAGGAGGCCGTTGCGATAACACCAAACTGTTGTCTGAAAGTCACAATGTTTCTCACATTCGAGCTAATGATCCAGCTGTTGAGAGTGCTGTGAGGGGAACAAGGGTTGAATGTTTAGAGATACATT

Fln Alignment:

biogeco3_mira_c10853___YVNGQPNEDGKMRDLRIARNFTVHSVVKWLDKQFVKYPKLRVFMRTLSPRHFFNGDWDSGGRCDNTKLLSESHNVSHIRANDPAVESAVRGTRVECLEI
A9NUP3__________________YVNGQPKNDRTLRDLKSARNLTVHSVVKWLDEQFDKYPNLRVFMRTLSPRHFFNGDWNSGGRCDNTKLLFGSHNVSH--NNDPAAESAVQGTRVEYLDI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
167	33		66		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain