SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15410

Length: 530 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15410
CCATCTTGTTATTGCATTTAGCTGTTCGTAATGGTTGGTCTCTTAATTCTGAAAGGCATGGCAATGTTGGCATTTCGGGAGTGTGTGCATATGGATCCGTACAATGCCTTCTCAAACTGGAACCCTTATGATGAGGATCCTTGCAAATGGCGTGGAGTAAGTTGTGTAAATGGGAAAGTCATCTCTCTGGAGTTGGAAGATCTTTCTCTTCAAGGAATTCTGGCACCTGAACTTGGGCAACTTATCCATCTTCAAAAACTTGCCCTTGGTGAGAACAATTTCTCAGGGAGCATTCCAAAAGAACTTGGAGACTTAGGAAACCTGGAGCTTTTGAATTTAAGACATAATGGTTTGGTTGGCAAGATTCCTTCAAATATGGGATACCTTGACAAGAAGGACATGATACAATATATGGTGGACCCTTCCTTGAAATCTTTCAAGTACAATGAATTAGAAAAAATATGTAGAGGTTGTACAGTCAATGCATTCGTCCATATCCTGACCAGAGGCTGTCAATGAAAGATATTACT

Ace file of the UniGene biog3_v1.0_unigene15410 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4307	1/2
SustainPine v2.0	sp_v2.0_unigene6423	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9T7R3_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	probable lrr receptor-like serine threonine-protein kinase mrh1-like	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	73%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3		IPR012335	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMF2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 33 aas, your sequence is shorter than subject: 173 - 754

Fln protein: PSCYCI*LFVMVGLLILKGMAMLAFRECVHMDPYNAFSNWNPYDEDPCKWRGVSCVNGKVISLELEDLSLQGILAPELGQLIHLQKLALGENNFSGSIPKELGDLGNLELLNLRHNGLVGKIPSNMGYLDKKDMIQYMVDPSLKSFKYNELEKICRGCTVNAFVHILTRGCQ*

Protein Length: 174

Fln nts: CCATCTTGTTATTGCATTTAGCTGTTCGTAATGGTTGGTCTCTTAATTCTGAAAGGCATGGCAATGTTGGCATTTCGGGAGTGTGTGCATATGGATCCGTACAATGCCTTCTCAAACTGGAACCCTTATGATGAGGATCCTTGCAAATGGCGTGGAGTAAGTTGTGTAAATGGGAAAGTCATCTCTCTGGAGTTGGAAGATCTTTCTCTTCAAGGAATTCTGGCACCTGAACTTGGGCAACTTATCCATCTTCAAAAACTTGCCCTTGGTGAGAACAATTTCTCAGGGAGCATTCCAAAAGAACTTGGAGACTTAGGAAACCTGGAGCTTTTGAATTTAAGACATAATGGTTTGGTTGGCAAGATTCCTTCAAATATGGGATACCTTGACAAGAAGGACATGATACAATATATGGTGGACCCTTCCTTGAAATCTTTCAAGTACAATGAATTAGAAAAAATATGTAGAGGTTGTACAGTCAATGCATTCGTCCATATCCTGACCAGAGGCTGTCAATGAAAGATATTACT

Fln Alignment:

biogeco3_mira_c10674___KGMAMLAFRECVHMDPYNAFSNWNPYDEDPCKWRGVSCVNGKVISLELEDLSLQGILAPELGQLIHLQKLALGENNFSGSIPKEXXXXXXXXXXXXXXXXLVGKIPSNMGYLDKKDMIQYMVDPSLKSFKYNELEKICRGC
B8LMF2__________________EGMVMLAFRGCVDMDPYNAFSNWNPDDEDPCKWRGVSCVDGNVVSLELVDLSLQGILAPELGQLIHLQKLVLCKNNFSGSIPKELGELGNLELLNLSHNGLIGKIPSDLGNISTLKSL-LLTDNKLEGSIPPELGKIISLC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain