SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15394

Length: 273 nt

UniGene Fasta

>biog3_v1.0_unigene15394
CTGAAGGAACTCAGGGACCATGCTAATTCCAACCCAGTAATTATGCTAATAGGAAACAAATCTGATTTACAACATTTACGCAGTGTATCAACAGAAGATGCTCAGAAGTTTGCTGAGAAGGAAGGTCTACTCTTTATGGAGACATCAGCATTTAAAGCTACAAATGTTGATAAGGCATTGCAAATAATTCTGCAAGAAATACATCGAGTATTCAGTGAGAAGGAAGTTCATTCTGAGGATTCAAAAGGTGTGAGCACTCAAGATGGAAAAGCT

Ace file of the UniGene biog3_v1.0_unigene15394

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9174	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein RABA2a [Arabidopsis thaliana] sp\|O04486.1\|RAA2A_ARATH RecName: Full=Ras-related protein RABA2a; Short=AtRABA2a; AltName: Full=Ras-related protein Rab11C; Short=AtRab11C; Flags: Precursor gb\|AAB60720.1\| Strong similarity to A. thaliana	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	rab11 -family small gtpase	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	cytokinesis	GO:0000910	Biological Process	80%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	80%
Blast2go	protein transport	GO:0015031	Biological Process	80%
Blast2go	GTP binding	GO:0005525	Molecular Function	80%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	80%
Blast2go	endosome	GO:0005768	Cellular Component	80%
Blast2go	cell plate	GO:0009504	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GCK	IPR012891	-	-
Sma3		IPR013753	-	-
Sma3		IPR015595	-	-
Sma3	DNA-directed DNA polymerase, family A, conserved site	IPR019760	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNM0

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 91 - 214

Fln protein: LKELRDHANSNPVIMLIGNKSDLQHLRSVSTEDAQKFAEKEGLLFMETSAFKATNVDKALQIILQEIHRVFSEKEVHSEDSKGVSTQDGKA

Protein Length: 92

Fln nts: CTGAAGGAACTCAGGGACCATGCTAATTCCAACCCAGTAATTATGCTAATAGGAAACAAATCTGATTTACAACATTTACGCAGTGTATCAACAGAAGATGCTCAGAAGTTTGCTGAGAAGGAAGGTCTACTCTTTATGGAGACATCAGCATTTAAAGCTACAAATGTTGATAAGGCATTGCAAATAATTCTGCAAGAAATACATCGAGTATTCAGTGAGAAGGAAGTTCATTCTGAGGATTCAAAAGGTGTGAGCACTCAAGATGGAAAAGCT

Fln Alignment:

biogeco3_mira_c10622___LKELRDHANSNPVIMLIGNKSDLQHLRSVSTEDAQKFAEKEGLLFMETSAFKATNVDKALQIILQEIHRVFSEKEVHSEDSKGVSTQDGK
B8LNM0__________________LKELRDHANSNPVIMLIGNKSDLQHLRSVSTEDAQKFAEKEGLLFMETSAFKSTNVDKALQIILQEIHRVFSEKELHSEESNGVSTQDGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain