SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15392

Length: 248 nt

UniGene Fasta

>biog3_v1.0_unigene15392
AATGTCAAGAGGGTGGAACATTATGCTTTCCTACTGGTTGCAATGGAAATTATGTTAATGCGGCTGAATTCCTGAAAGCAAATATTGTTAGTATTCCGACAAGTATTAACGCTAAATTCAAACTGACAGATAAGATAGTTGAACAGCACTTCAGGTCTGTAAAAAGACCATGGCTTTATATTTCTGGTCCTACGATCAATCCAACAGGTTTGATTTACACTAATGAAGAAATATGCTCCATTCTTGCT

Ace file of the UniGene biog3_v1.0_unigene15392

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17998	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[E] COG0436 Aspartate/tyrosine/aromatic aminotransferase	-	-	2.0e-06	24%
FL-Next	sp=Methionine S-methyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Blast2go	methionine s-methyltransferase	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	S-adenosylmethionine metabolic process	GO:0046500	Biological Process	0.0	70%
Blast2go	S-adenosylmethionine-dependent methyltransferase activity	GO:0008757	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LTB2

Fln msg: Distance to subject end: 220 aas, your sequence is shorter than subject: 82 - 1071

Fln protein: CQEGGTLCFPTGCNGNYVNAAEFLKANIVSIPTSINAKFKLTDKIVEQHFRSVKRPWLYISGPTINPTGLIYTNEEICSILA

Protein Length: 83

Fln nts: AATGTCAAGAGGGTGGAACATTATGCTTTCCTACTGGTTGCAATGGAAATTATGTTAATGCGGCTGAATTCCTGAAAGCAAATATTGTTAGTATTCCGACAAGTATTAACGCTAAATTCAAACTGACAGATAAGATAGTTGAACAGCACTTCAGGTCTGTAAAAAGACCATGGCTTTATATTTCTGGTCCTACGATCAATCCAACAGGTTTGATTTACACTAATGAAGAAATATGCTCCATTCTTGCT

Fln Alignment:

biogeco3_mira_c10617___QEGGTLCFPTGCNGNYVNAAEFLKANIVSIPTSINAKFKLTDKIVEQHFRSVKRPWLYISGPTINPTGLIYTNEEICSILA
Q9LTB2__________________QEGGTLCLPAGTNGNYVAAAKFLKANVVNIPTESSDGFKLTEKTLTKALESVKKPWVCISGPTVSPTGLVYSNEEMDILLS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
111		66		33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain