SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15377

Length: 317 nt

UniGene Fasta

>biog3_v1.0_unigene15377
AATGTTCCAGGTGGGGCAAAAATGACACTTTTCACTCCGGCTGCTTGAGTGGAGATGGCACATTCCACTATGGCATCTACAAATGGGCACTGCCCTTAGTTACCAGTACAAGATGGACAGAAAGAACGTTGTACCCAATTTTCTGGGGCCTCATGACCTTAAGCACATTTGGCAATGATTTGGAACCAACGTGCCATTGGATTGAGGTGGTATTCAGCATCCTTATCGTTCTACGTTCTCCTCCTGTTTACACTGCTCATTGGCAATATTCAGGTTTTTTCTACACGCAGTTATGACAAAAGAACGACTGCTGCAGC

Ace file of the UniGene biog3_v1.0_unigene15377

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene957	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Putative cyclic nucleotide-gated cation channel n=1 Tax=Sandersonia aurantiaca RepID=B1PJP3_SANAU	-	-	57%
FL-Next	sp=Cyclic nucleotide-gated ion channel 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	cyclic nucleotide-gated ion	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	75%
Blast2go	membrane	GO:0016020	Cellular Component	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Potassium channel, voltage-dependent, EAG/ELK/ERG	IPR003938	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	Ribonuclease H1, N-terminal	IPR011320	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O65718

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 263 aas, your sequence is shorter than subject: 98 - 726

Fln protein: CSRWGKNDTFHSGCLSGDGTFHYGIYKWALPLVTSTRWTERTLYPIFWGLMTLSTFGNDLEPTCHWIEVVFSILIVLRSPPVYTAHWQYSGFFYTQL*

Protein Length: 99

Fln nts: AATGTTCCAGGTGGGGCAAAAATGACACTTTTCACTCCGGCTGCTTGAGTGGAGATGGCACATTCCACTATGGCATCTACAAATGGGCACTGCCCTTAGTTACCAGTACAAGATGGACAGAAAGAACGTTGTACCCAATTTTCTGGGGCCTCATGACCTTAAGCACATTTGGCAATGATTTGGAACCAACGTGCCATTGGATTGAGGTGGTATTCAGCATCCTTATCGTTCTACGTTCTCCTCCTGTTTACACTGCTCATTGGCAATATTCAGGTTTTTTCTACACGCAGTTATGACAAAAGAACGACTGCTGCAGC

Fln Alignment:

biogeco3_mira_c10573___CLSGDGTFHYGIYKWALPLVTSTRWTERTLYPIFWGLMTLSTFGNDLEPTCHWIEVVFSILIVLRSPPVYT
O65718__________________CLDSNGPFRYGIYRWALPVISSNSLAVKILYPIFWGLMTLSTFANDLEPTSNWLEVIFSIVMVLSGLLLFT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
37	33	66			0.997452
38	33	66			0.997452
39			66	33	0.997452
41		66		33	0.997452
79		66		33	0.997452
113	66	33			0.997453

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain