SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15349

Length: 329 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15349
ATCCGAACCTTCAAGAACAAGAATTGATCACAGGCGTCAGTTTCTCCTCATCGGGGACAGGATTAGACAATCTCACCGCTGCCACTTTATCGGTGATTCCAATGTGGAAAGAAATCGAATATTTCAAGGAATATCGAACTCGGGTGGCCACGCTGGTTGGAGGTATAGAGAAGGCTTCCATGCTGTTGAATACCGCAGTGGCGTTTATCAGCATTGGCACTAACGACTTCATTGCAAATTATTTTCTGGAACCAATTCGCCCATCGCACTTTTCAGTTTCCCAATACGTAGATTTTCTATTGCACACATTATCTGGATATATTGACATT

Ace file of the UniGene biog3_v1.0_unigene15349 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26979	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SYX7_RICCO	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	gdsl esterase lipase	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NS48

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 109 - 355

Fln protein: PNLQEQELITGVSFSSSGTGLDNLTAATLSVIPMWKEIEYFKEYRTRVATLVGGIEKASMLLNTAVAFISIGTNDFIANYFLEPIRPSHFSVSQYVDFLLHTLSGYIDI

Protein Length: 110

Fln nts: ATCCGAACCTTCAAGAACAAGAATTGATCACAGGCGTCAGTTTCTCCTCATCGGGGACAGGATTAGACAATCTCACCGCTGCCACTTTATCGGTGATTCCAATGTGGAAAGAAATCGAATATTTCAAGGAATATCGAACTCGGGTGGCCACGCTGGTTGGAGGTATAGAGAAGGCTTCCATGCTGTTGAATACCGCAGTGGCGTTTATCAGCATTGGCACTAACGACTTCATTGCAAATTATTTTCTGGAACCAATTCGCCCATCGCACTTTTCAGTTTCCCAATACGTAGATTTTCTATTGCACACATTATCTGGATATATTGACATT

Fln Alignment:

biogeco3_mira_c10495___PNLQEQELITGVSFSSSGTGLDNLTAATLSVIPMWKEIEYFKEYRTRVATLVGGIEKASMLLNTAVAFISIGTNDFIANYFLEPIRPSHFSVSQYVDFLLHTLSGYI
A9NS48__________________PKLQDSDLITGVSFDSAGTGLDNITSTIQEVIPFWKEVEYFKEYKTRLIGLVGD-ERANMILSEAIYFIVIGTNDFAVNYYNYPFRSAHYTVSQYTDFLLQIYASHI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
106	33		66		0.997452
136			66	33	0.997452
147	33		66		0.997452
153	66	33			0.997452
160		66		33	0.997452
172	66	33			0.997452
186	33	66			0.997452
238	33	66			0.997454
256		33	66		0.997458
262	33		66		0.997452
271			33	66	0.997452
291		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain