SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15347

Length: 280 nt

UniGene Fasta

>biog3_v1.0_unigene15347
AATGTAAAAGTTTGCCCCAAGTAAACTATGGTATATTGATCAGATGATCAAAGTTCTGACTGAGGCTGGGAGCTATGTCACTGATGAAGTCTGCTATGCTCTCATTGTGGTGATAAGTAATGCGATGGACCTTCAAGGATATACTGTAAGGTCTCTTTATCGAGTTTGTCAGAATGGGAATGAGCAGGAAAGTCTTCTTCGGGTTACTGTTTGGTGTATTGGGGAGTATGGCGAAATGCTGGTAAACCATGCCGGTGAACTTGAGGGGGAGGAACACATT

Ace file of the UniGene biog3_v1.0_unigene15347

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15200	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	AP-1 complex subunit gamma-2, putative n=1 Tax=Ricinus communis RepID=B9S4M0_RICCO	-	-	66%
FL-Next	sp=AP-1 complex subunit gamma-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	ap-1 complex subunit gamma-2	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	IPR008152	-	-
Sma3	Clathrin adaptor, gamma-adaptin, appendage	IPR008153	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Adaptor protein complex AP-1, gamma subunit	IPR017107	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZUI6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 358 aas, your sequence is shorter than subject: 93 - 862

Fln protein: M*KFAPSKLWYIDQMIKVLTEAGSYVTDEVCYALIVVISNAMDLQGYTVRSLYRVCQNGNEQESLLRVTVWCIGEYGEMLVNHAGELEGEEHI

Protein Length: 94

Fln nts: AATGTAAAAGTTTGCCCCAAGTAAACTATGGTATATTGATCAGATGATCAAAGTTCTGACTGAGGCTGGGAGCTATGTCACTGATGAAGTCTGCTATGCTCTCATTGTGGTGATAAGTAATGCGATGGACCTTCAAGGATATACTGTAAGGTCTCTTTATCGAGTTTGTCAGAATGGGAATGAGCAGGAAAGTCTTCTTCGGGTTACTGTTTGGTGTATTGGGGAGTATGGCGAAATGCTGGTAAACCATGCCGGTGAACTTGAGGGGGAGGAACACATT

Fln Alignment:

biogeco3_mira_c10488___KFAPSKLWYIDQMIKVLTEAGSYVTDEVCYALIVVISNAMDLQGYTVRSLYRVCQNGNEQESLLRVTVWCIGEYGEMLVNHAGELEGEEHI
Q9ZUI6__________________KFAPEKIWYIDQMLKVLSEAGTYVKEDVWHALIVVITNAPDLHGYTVRALYRALHTSFEQETLVRVAIWCIGEYADLLVNNAGMLDLEDPI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
81	25	75			0.996473
84	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain