SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15332

Length: 440 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15332
AATGTCTTTCAGGGGCTTATAACACACCCTCCGGCTCCTCTTCTTCAATCTCCTCTGGTCTCTCTATTTCTCTGGCTGGCGCTCAAGGCCAGGTCGTCGGAGGCAGTGTAGCCGGCGCTCTTAGGGCTGCCGGGCCGGTCATTGTCATAGTTGCGTCGTTCACCAGTCCTTCTCATCACAATCTTCCACAAGACGATCAAGAAGAGAATGGCAATGGAAACAGTGCTGCTGTTCCTCCGCCTGCAAATGTTGGGGCGCCTAATGGATACAACATTACTCCATCGAATTCGGATTCCTGCGTCTACACTGTATCGCCCAACCCTATCAGTTCCCAGCTTCCACCGGATCATGTTCTGCCAAGACAGACCCAGGCCAGTGTTCGTCCCCCTTACTCAATTCGCTAGTTCCTCAAATTTTGTACTCATCGATTTATTTACATT

Ace file of the UniGene biog3_v1.0_unigene15332 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14843	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AT-hook DNA-binding protein (Fragment) n=1 Tax=Catharanthus roseus RepID=A1DR79_CATRO	-	-	2.0e-35	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	protein	-	-	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF296	IPR005175	-	0.0	-
Sma3	Predicted AT-hook DNA-binding	IPR014476	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPP3

Fln msg: your sequence is shorter than subject: 134 - 271

Fln protein: CLSGAYNTPSGSSSSISSGLSISLAGAQGQVVGGSVAGALRAAGPVIVIVASFTSPSHHNLPQDDQEENGNGNSAAVPPPANVGAPNGYNITPSNSDSCVYTVSPNPISSQLPPDHVLPRQTQASVRPPYSIR*

Protein Length: 135

Fln nts: AATGTCTTTCAGGGGCTTATAACACACCCTCCGGCTCCTCTTCTTCAATCTCCTCTGGTCTCTCTATTTCTCTGGCTGGCGCTCAAGGCCAGGTCGTCGGAGGCAGTGTAGCCGGCGCTCTTAGGGCTGCCGGGCCGGTCATTGTCATAGTTGCGTCGTTCACCAGTCCTTCTCATCACAATCTTCCACAAGACGATCAAGAAGAGAATGGCAATGGAAACAGTGCTGCTGTTCCTCCGCCTGCAAATGTTGGGGCGCCTAATGGATACAACATTACTCCATCGAATTCGGATTCCTGCGTCTACACTGTATCGCCCAACCCTATCAGTTCCCAGCTTCCACCGGATCATGTTCTGCCAAGACAGACCCAGGCCAGTGTTCGTCCCCCTTACTCAATTCGCTAG___TTCCTCAAATTTTGTACTCATCGATTTATTTACATT

Fln Alignment:

biogeco3_mira_c10441___RAAGPVIVIVASFTSPSHHNLPQDDQEEXXXXXXXXXXXXXXXXXXXGYNITPSNSDSCVYTVSPNPISSQLPPDHVLPRQTQASVRPPYSIR
B8LPP3__________________RAAGPVIVIVASFSSPAHHNLPHDDEEDNGNGNGTVGPPASIGANG--YNMTPTNSDSCVYTVSPNPINSQLPPDHVLPWPTQASVRPPYSIR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
182	25		75		0.996473
183	25		75		0.996473
184		75		25	0.996473
186		75		25	0.996474
406	33		66		0.997452
408	33	66			0.997452
409			66	33	0.997452
410			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain