SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15314

Length: 278 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15314
GTCGTCATTGAGTATGTATCTAATGGAAAGAATTGTCAAAACCATGATTGCCCACAAAATGGACAACTGGGTTATCAGCAGATTTCTTTCGCAATACCTGAAGTCTGCCTTGCCCATGCTTGGCTACAGCTCCATATCCCCCAAGAAAAATGTGGGAGGGATGAGCAGATTATGCAACGCTATGCCCAGAAAGTGCAGAGGGAAGTTCTCGAAGCTGTTGTAACATTGCTTCATACTTTGGAGAGAGCAACAATCACATGCAAGAGCTTGTTTACATT

Ace file of the UniGene biog3_v1.0_unigene15314 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene38964	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] sp\|Q9C5J4.1\|Y3210_ARATH RecName: Full=BTB/POZ domain-containing protein At3g22104 gb\|AAK25920.1\|AF360210_1 unknown protein [Arabidopsis thaliana] gb\|AAK64116.1\| unknown protein [Arabidopsis	-	-	1.0e-16	45%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	65%
Blast2go	btb poz domain-containing protein at3g22104-like	-	-	1.93491e-33	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	NPH3	IPR004249	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SRF2

Fln msg: Separated hits, possible frame ERROR between 133 and 157, Distance to subject end: 295 aas, your sequence is shorter than subject: 92 - 602

Fln protein: SSLSMYLMERIVKTMIAHKMDNWVISRFLSQYLKSALPMLGYSxxxxxxxxxRDEQIMQRYAQKVQREVLEAVVTLLHTLERATITCKSLFT

Protein Length: 93

Fln nts: GTCGTCATTGAGTATGTATCTAATGGAAAGAATTGTCAAAACCATGATTGCCCACAAAATGGACAACTGGGTTATCAGCAGATTTCTTTCGCAATACCTGAAGTCTGCCTTGCCCATGCTTGGCTACAGCTCxxxxxxxxxxxxxxxxxxxxxxxxGAGGGATGAGCAGATTATGCAACGCTATGCCCAGAAAGTGCAGAGGGAAGTTCTCGAAGCTGTTGTAACATTGCTTCATACTTTGGAGAGAGCAACAATCACATGCAAGAGCTTGTTTACATT

Fln Alignment:

biogeco3_mira_c10373___SLSMYLMERIVKTMIAHKMDNWVISRFLSQYLKSALPMLGYSSxxxxxxxxRDEQIMQRYAQKVQREVLEAVVTLLHTLERATITCKSLF
D8SRF2__________________SLSMYLMERIVKAMISNNMDNRILARFLVHYVQTALPTLGYHSxxxxxxxxRDEHILQKYTQKVQRELLETVIALLGHLDHGSAPCSSLF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
90	33	66			0.997471

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain