SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15280

Length: 406 nt

UniGene Fasta

>biog3_v1.0_unigene15280
AATGTATAAGCAAATGAGCCTAAAGATCAGGATTTGTTTGGCGTAATGGTGAAAATTTGTGTGGAGGCTTAAAGATCTAAGCTGTTGCAGGTTTAGAACTGGAGAAATAGGTTTTTTCGGCTGTAAATAGCCATGGGAAGAGGCGGAGAAGATTACGGCACGCAGAGCCCTGTGATCAAGTCCTCCGATCAGAAAATCTTCCCCGCTTGGGCCAGAGATGTAGAGGATTGTGCGAAAGAATTCGAAGTAGATGTCGAACAGGGGCTGAGCAGCGAAGATGTCGAGAGACGGCGGAAAATATGGGGTTGGAATGAGCTGGAAAAGCATTCGGGGCCGTCGGTTTGGAAGCTTATCCTTGATCAATTTAATGACACTCTGGTAAGAATTTTACTCGTGGCCGCTGTTG

Ace file of the UniGene biog3_v1.0_unigene15280

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11121	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative calcium ATPase [Oryza sativa Japonica Group] gb\|ABF95313.1\| Calcium-transporting ATPase 4, endoplasmic reticulum-type, putative, expressed [Oryza sativa Japonica Group] gb\|EAZ26484.1\| hypothetical protein OsJ_10376 [Oryza sativa Japonica Group]	-	-	0.0	74%
FL-Next	sp=Calcium-transporting ATPase 4, endoplasmic reticulum-type; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	56%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type, calcium-transporting	IPR005782	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9XES1

Fln msg: Distance to subject end: 969 aas, your sequence is shorter than subject: 91 - 1061

Fln protein: MGRGGEDYGTQSPVIKSSDQKIFPAWARDVEDCAKEFEVDVEQGLSSEDVERRRKIWGWNELEKHSGPSVWKLILDQFNDTLVRILLVAAV

Protein Length: 92

Fln nts: AATGTATAAGCAAATGAGCCTAAAGATCAGGATTTGTTTGGCGTAATGGTGAAAATTTGTGTGGAGGCTTAAAGATCTAAGCTGTTGCAGGTTTAGAACTGGAGAAATAGGTTTTTTCGGCTGTAAATAGCC_-_ATGGGAAGAGGCGGAGAAGATTACGGCACGCAGAGCCCTGTGATCAAGTCCTCCGATCAGAAAATCTTCCCCGCTTGGGCCAGAGATGTAGAGGATTGTGCGAAAGAATTCGAAGTAGATGTCGAACAGGGGCTGAGCAGCGAAGATGTCGAGAGACGGCGGAAAATATGGGGTTGGAATGAGCTGGAAAAGCATTCGGGGCCGTCGGTTTGGAAGCTTATCCTTGATCAATTTAATGACACTCTGGTAAGAATTTTACTCGTGGCCGCTGTTG

Fln Alignment:

biogeco3_mira_c10300___MGRGGEDYG---TQSPVIKSSDQKIFPAWARDVEDCAKEFEVDVEQGLSSEDVERRRKIWGWNELEKHSGPSVWKLILDQFNDTLVRILLVAAV
Q9XES1__________________MGKGGEDCGNKQTNSSELVKSDT--FPAWGKDVSECEEKFGVSREKGLSTDEVLKRHQIYGLNELEKPEGTSIFKLILEQFNDTLVRILLAAAV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
238	66			33	0.997464
284	33	66			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain