SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15268

Length: 240 nt

UniGene Fasta

>biog3_v1.0_unigene15268
GCAGTTGAATGTTGTTACTGCAGCTGCTAATATTCGAGCTTCTTCTTTTGGCATCCAAATGCAAAGCTTGTTTGAAGCGAAAGGCATTGCAGGCAATATTGTTCATGCAATAGCAACAACAAATGCAATCATTGCAGGTCTAATTGTACTTGAAACAACTAAGTTGCTCAGAAATGATTCAAAGAACTATAGAATGACATACTGCTTACAACATCCCATCAAGGAAGATGCTTCTACATT

Ace file of the UniGene biog3_v1.0_unigene15268

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9765	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-activating enzyme E1b, putative n=1 Tax=Ricinus communis RepID=B9RH95_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	sumo-activating enzyme subunit 2	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	78%
Blast2go	protein sumoylation	GO:0016925	Biological Process	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	SUMO activating enzyme activity	GO:0019948	Molecular Function	78%
Blast2go	cytosol	GO:0005829	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin/SUMO-activating enzyme E1	IPR000011	-	-
Sma3	Ubiquitin-activating enzyme repeat	IPR000127	-	-
Sma3	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	MoeZ/MoeB	IPR007901	-	-
Sma3	E2 binding	IPR014929	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Ubiquitin-activating enzyme, E1, active site	IPR018074	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NU65

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 79 - 379

Fln protein: QLNVVTAAANIRASSFGIQMQSLFEAKGIAGNIVHAIATTNAIIAGLIVLETTKLLRNDSKNYRMTYCLQHPIKEDAST

Protein Length: 80

Fln nts: GCAGTTGAATGTTGTTACTGCAGCTGCTAATATTCGAGCTTCTTCTTTTGGCATCCAAATGCAAAGCTTGTTTGAAGCGAAAGGCATTGCAGGCAATATTGTTCATGCAATAGCAACAACAAATGCAATCATTGCAGGTCTAATTGTACTTGAAACAACTAAGTTGCTCAGAAATGATTCAAAGAACTATAGAATGACATACTGCTTACAACATCCCATCAAGGAAGATGCTTCTACATT

Fln Alignment:

biogeco3_mira_c10264___LNVVTAAANIRASSFGIQMQSLFEAKGIAGNIVHAIATTNAIIAGLIVLETTK-LLRNDSKNYRMTY
A9NU65__________________MDLIAGFANMRARNYSIPEVDKLKAKFIAGRIIPAIATTTAMATGLVCLELYKVILDHKVEKYRNTF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
95	33	66			0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain