SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15232

Length: 235 nt

UniGene Fasta

>biog3_v1.0_unigene15232
TGTTCCAGATTGGAACAAGGCATTAAAACTTCATACCTATATTAATAGACTCCCAAAGGCCCCACAGATTTCTCAGTTAGAGCAGATTCTGTGCTTGGTGTTTAACTCTAAGAAACCTGTCCTATATGTTGGTGGGGGTTGCCTCAATGCTAGTCTGGAACTCAGAGAATTTGTAGATCATACATGCATTCCAGTGGCCAGTACTTTAATGGGCTTAGGATCTTTTCCATACATT

Ace file of the UniGene biog3_v1.0_unigene15232

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30125	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Acetolactate synthase n=1 Tax=Picea sitchensis RepID=B8LK99_PICSI	-	-	87%
FL-Next	sp=Acetolactate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	acetolactate synthase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetolactate synthase.	EC:2.2.1.6	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Valine, leucine and isoleucine biosynthesis	00290	86%
Blast2go	Butanoate metabolism	00650	86%
Blast2go	C5-Branched dibasic acid metabolism	00660	86%
Blast2go	Pantothenate and CoA biosynthesis	00770	86%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	acetolactate synthase activity	GO:0003984	Molecular Function	0.0	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Chalcone/stilbene synthase, N-terminal	IPR001099	-	-
Sma3	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	IPR011766	-	-
Sma3	Thiamine pyrophosphate enzyme, central domain	IPR012000	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Acetolactate synthase, large subunit, biosynthetic	IPR012846	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK99

Fln msg: Distance to subject end: 327 aas, your sequence is shorter than subject: 78 - 669

Fln protein: VPDWNKALKLHTYINRLPKAPQISQLEQILCLVFNSKKPVLYVGGGCLNASLELREFVDHTCIPVASTLMGLGSFPYI

Protein Length: 79

Fln nts: TGTTCCAGATTGGAACAAGGCATTAAAACTTCATACCTATATTAATAGACTCCCAAAGGCCCCACAGATTTCTCAGTTAGAGCAGATTCTGTGCTTGGTGTTTAACTCTAAGAAACCTGTCCTATATGTTGGTGGGGGTTGCCTCAATGCTAGTCTGGAACTCAGAGAATTTGTAGATCATACATGCATTCCAGTGGCCAGTACTTTAATGGGCTTAGGATCTTTTCCATACATT

Fln Alignment:

biogeco3_mira_c10161___VPDWNKALKLHTYINRLPKAPQISQLEQILCLVFNSKKPVLYVGGGCLNASLELREFVDHTCIPVASTLMGLGSFP
B8LK99__________________VPDWNKAIKLHGYMERLPKAPQISQLEQILRLVFNSKKPVLYVGGGCLNASQELREFVDHTGIPVASTLMGLGSFP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain