SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15231

Length: 365 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15231
TGTCAGATAGACATTCTCCGCCATCTTCTAAGAAGCCCAATAGAATGGCCCCTCACAGTGGTTTCACTACTCCGGCTGTAGGGGATTGCATGGCTCCCAGTTGTGTGATGCCTACAGAGATTGAATCCTTTCTGCAGCCTGCCGAGAAGATTGGTATGGATATGCTTCAATGGCCTAGGATATTTATCTCATTGTCACGTAAAGAGAAGGAGGACGACTTTTTTGTTATTAAGGGCAGCAAACTTCCACAGAGACCCAAAAGGCGTCCAAAACTTGTGGAGAGGAACTTGCTGAATTGCTATCCTGGTGTTTGGCTTTCTGATGTAGGCTAGGGGACGATACGATGTTAGAGAAAAAAGGACATT

Ace file of the UniGene biog3_v1.0_unigene15231 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6993	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1639 domain containing protein	-	-	9.0e-17	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	protein	-	-	9.99596e-38	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	9.99596e-38	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1639	IPR012438	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW57

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 18 aas, your sequence is shorter than subject: 110 - 347

Fln protein: SDRHSPPSSKKPNRMAPHSGFTTPAVGDCMAPSCVMPTEIESFLQPAEKIGMDMLQWPRIFISLSRKEKEDDFFVIKGSKLPQRPKRRPKLVERNLLNCYPGVWLSDVG*

Protein Length: 111

Fln nts: TGTCAGATAGACATTCTCCGCCATCTTCTAAGAAGCCCAATAGAATGGCCCCTCACAGTGGTTTCACTACTCCGGCTGTAGGGGATTGCATGGCTCCCAGTTGTGTGATGCCTACAGAGATTGAATCCTTTCTGCAGCCTGCCGAGAAGATTGGTATGGATATGCTTCAATGGCCTAGGATATTTATCTCATTGTCACGTAAAGAGAAGGAGGACGACTTTTTTGTTATTAAGGGCAGCAAACTTCCACAGAGACCCAAAAGGCGTCCAAAACTTGTGGAGAGGAACTTGCTGAATTGCTATCCTGGTGTTTGGCTTTCTGATGTAGGCTAGGGGACGATACGATGTTAGAGAAAAAAGGACATT

Fln Alignment:

biogeco3_mira_c10158___DRHSPPSSKKPNRMAPHSGFTTPAVGDCMAPSCVM---PTEIESFLQPAEKIGMDMLQWPRIFISLSRKEKEDDFFVIKGSKLPQRPKRRPKLVERNLLNCYPGVWLSDVG*GTIRC*RKK
A9NW57__________________DRHSPSPVEKHAKSV--GCFSPNAIGTTRVSDAVRNSTPSDTDA-CAPPEKIDMETFEWPRFLVSLSRKEKEDDFLIMKGTKLSQRPKKRPKYIEKVLQNCFPGSWLSDVAKGRYEVREKK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain