SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15225

Length: 296 nt

UniGene Fasta

>biog3_v1.0_unigene15225
AATGTATTCAAAGTTTACATTTATCCTGACGGCGATTCCGTAAAACGTTTTATCAAACCCCGAGGAAGCTGACAGGGAAATATGCGAGCGAGGGTTACTTCTTCCAGAACATTCGGGAGAGCAGGTTTCGTGTAGACAATCCCGAGGAGGCTCACCTATTCTTCATTCCCATCTCTTGCCATAAAATGAGAGGAAAGGGACATCTTATGAGAACATGACAGTTATTGTTCAGAATTATGTTGAAAGCCTAGCAAGCAAGTACCCTTATTGGAATCGGACCTTGGGAGCTGATCACT

Ace file of the UniGene biog3_v1.0_unigene15225

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8326	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SA61_RICCO	-	-	82%
FL-Next	sp=Probable glycosyltransferase At5g03795; Arabidopsis thaliana (Mouse-ear cress).	-	-	45%
Blast2go	exostosin family protein	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-	EC:2.4.1.224	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycosaminoglycan biosynthesis - heparan sulfate	00534		0.0	92%
Blast2go	Metabolic pathways	01100		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity	GO:0050508	Molecular Function	92%
Blast2go	membrane	GO:0016020	Cellular Component	92%
Blast2go	chloroplast	GO:0009507	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FFN2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 234 aas, your sequence is shorter than subject: 72 - 518

Fln protein: CIQSLHLS*RRFRKTFYQTPRKLTGKYASEGYFFQNIRESRFRVDNPEEAHLFFIPISCHKMRGKGHLMRT*

Protein Length: 73

Fln nts: AATGTATTCAAAGTTTACATTTATCCTGACGGCGATTCCGTAAAACGTTTTATCAAACCCCGAGGAAGCTGACAGGGAAATATGCGAGCGAGGGTTACTTCTTCCAGAACATTCGGGAGAGCAGGTTTCGTGTAGACAATCCCGAGGAGGCTCACCTATTCTTCATTCCCATCTCTTGCCATAAAATGAGAGGAAAGGGACATCTTATGAGAACATGACAGTTATTGTTCAGAATTATGTTGAAAGCCTAGCAAGCAAGTACCCTTATTGGAATCGGACCTTGGGAGCTGATCACT

Fln Alignment:

biogeco3_mira_c10137___YASEGYFFQNIR-ESRFRVDNPEEAHLFFIPISCHKM
Q9FFN2__________________YSMEGSFIYEIETDTRFRTNNPDKAHVFYLPFSVVKM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain