SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15223

Length: 259 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15223
TTATGGAGGTATATCACATTCTAATAAGGGGAGAGGTGCTCTCAAGGGCCAGTCTATAATAGACTCTACACCTTCACAAAATGACACAGGTAGAAGAGATCCAGGAGATATTGAGTTACGACAAACAGATAAACTTATAAAGGAGGTGGAAAGGCTCGTTGGAGTAAGTTATCCCGATCCTGCAGATTTCGACAAAGCTAAGAAGGTGTTAAAGGATCATGAATTATCTCTACTTGAAGCAATTGAGAGATTAGCTGAA

Ace file of the UniGene biog3_v1.0_unigene15223 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene50	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	r-interacting factor1 [Zea mays] gb\|ABR67045.1\| R-interacting factor 1 [Zea mays]	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	emsy n terminus domain-containing protein	-	-	59%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-
Sma3	EMSY N-terminal	IPR005491	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tudor-like, plant	IPR014002	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA46

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 86 - 497

Fln protein: YGGISHSNKGRGALKGQSIIDSTPSQNDTGRRDPGDIELRQTDKLIKEVERLVGVSYPDPADFDKAKKVLKDHELSLLEAIERLAE

Protein Length: 87

Fln nts: TTATGGAGGTATATCACATTCTAATAAGGGGAGAGGTGCTCTCAAGGGCCAGTCTATAATAGACTCTACACCTTCACAAAATGACACAGGTAGAAGAGATCCAGGAGATATTGAGTTACGACAAACAGATAAACTTATAAAGGAGGTGGAAAGGCTCGTTGGAGTAAGTTATCCCGATCCTGCAGATTTCGACAAAGCTAAGAAGGTGTTAAAGGATCATGAATTATCTCTACTTGAAGCAATTGAGAGATTAGCTGAA

Fln Alignment:

biogeco3_mira_c10133___GGISHSNKGRGALKGQSIIDSTPSQNDTGRRDPGDIELRQTDKLIKEVERLVGVSYPDPADFDKAKKVLKDHELSLLEAIERLAE
D5AA46__________________GLVSTTGRGRGISKGQPRKDFAPSQNGIGKKVPGDIEILHTDTLLKEVERIFGGPQPDPADMEKAKKLLKEHEQSLVDAIARLAE

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
46	33	66			0.997452
47	33	66			0.997452
49			33	66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain