SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15208

Length: 210 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15208
TCGCGGGAAAAGGATCCAAACTTCATTTCCGAAAGTTACTCTGAGTGTTATCCGGGTTATCAGGAGTATAATCGGGAGATTGTAGACAGTGATGATGAGGATGACCTAACAAAAATGGATATGGGTGGCAGGGCTAAGGGCCGTCTCCATCGTTGGGACTTTGAGACGGAAGAAGAATGGGCAAAATATAATGAACAAAAGGAAGACATT

Ace file of the UniGene biog3_v1.0_unigene15208 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4023	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	pfam07808, RED_N, RED-like protein N-terminal region	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	splicing factor	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA splicing	GO:0008380	Biological Process	0.0	75%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	RED-like, C-terminal	IPR012492	-	-
Sma3	RED-like, N-terminal	IPR012916	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXF6

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 70 - 660

Fln protein: SREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLTKMDMGGRAKGRLHRWDFETEEEWAKYNEQKEDI

Protein Length: 71

Fln nts: TCGCGGGAAAAGGATCCAAACTTCATTTCCGAAAGTTACTCTGAGTGTTATCCGGGTTATCAGGAGTATAATCGGGAGATTGTAGACAGTGATGATGAGGATGACCTAACAAAAATGGATATGGGTGGCAGGGCTAAGGGCCGTCTCCATCGTTGGGACTTTGAGACGGAAGAAGAATGGGCAAAATATAATGAACAAAAGGAAGACATT

Fln Alignment:

biogeco3_mira_c10079___SREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLTKMDMGGRAKGRLHRWDFETEEEWAKYNEQKE
A9NXF6__________________AREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLTKMDMGGRAKGRLHRWDFETEEEWAKYNEQKE

SNPs (tot: 3)

Position	A %	C %	T %	Probability
80	33	66		0.997467
81	33	66		0.997467
84		66	33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain