SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15206

Length: 244 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15206
GATTTTGCGAGCCAATGGCAAGGATTTTGTAGATTTGTCCCCTCCTCGAGCTCTAAAAACTGAGGAGATCCCAGATATTGTTGACGATTTTCGTCTCGCTGCTAGAAATGCTATCAATGCAGGTTTTGATGGTGTTGAAATTCATGGTGCTCATGGATATCTTCTTGACCAATTTATGAAAGACAGTGTAAATAACAGGACCGATCAGTACGGTGGCACACTGGAGAACCGGTGCAGGTACATT

Ace file of the UniGene biog3_v1.0_unigene15206 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10034	2/3
SustainPine v2.0	sp_v2.0_unigene15649	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	old-yellow-enzyme homolog [Catharanthus roseus]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	12-oxophytodienoate reductase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	12-oxophytodienoate reductase.	EC:1.3.1.42	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	alpha-Linolenic acid metabolism	00592	86%
Blast2go	Biosynthesis of plant hormones	01070	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	86%
Blast2go	response to wounding	GO:0009611	Biological Process	86%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	86%
Blast2go	12-oxophytodienoate reductase activity	GO:0016629	Molecular Function	86%
Blast2go	FMN binding	GO:0010181	Molecular Function	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NT17

Fln msg: Distance to subject end: 153 aas, your sequence is shorter than subject: 81 - 376

Fln protein: ILRANGKDFVDLSPPRALKTEEIPDIVDDFRLAARNAINAGFDGVEIHGAHGYLLDQFMKDSVNNRTDQYGGTLENRCRYI

Protein Length: 82

Fln nts: GATTTTGCGAGCCAATGGCAAGGATTTTGTAGATTTGTCCCCTCCTCGAGCTCTAAAAACTGAGGAGATCCCAGATATTGTTGACGATTTTCGTCTCGCTGCTAGAAATGCTATCAATGCAGGTTTTGATGGTGTTGAAATTCATGGTGCTCATGGATATCTTCTTGACCAATTTATGAAAGACAGTGTAAATAACAGGACCGATCAGTACGGTGGCACACTGGAGAACCGGTGCAGGTACATT

Fln Alignment:

biogeco3_mira_c10075___ILRANGKDFVDLSPPRALKTEEIPDIVDDFRLAARNAINAGFDGVEIHGAHGYLLDQFMKDSVNNRTDQYGGTLENRCRY
A9NT17__________________VVLPNGKDLADYSPPRALKIEEIPQIINDFRLAARNAIKAGFDGVEIHGAHGYLLDQFMKDSINNRIDQYGGTLENRCRF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
127	66			33	0.997452
142	66			33	0.997452
148	33		66		0.997452
160	33		66		0.997452
162		66		33	0.997452
171		66	33		0.997452
175	33		66		0.997452
196		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain