SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15193

Length: 515 nt

UniGene Fasta

>biog3_v1.0_unigene15193
AATGTAATAATACTAATACTAATGTGTACTAAGCATTGTTTCAGCAGAGGAGAAGATGGTTACCTGTACTGTGAAGGTGTGAAGGTACAGGATGTAATGGATTCTGTGGAGCGGACTCCCTTCTATTTGTACAGTAAAACCCAACTAACCAGAAATTTCGAAGCCTATTTGACAGCAGTGGAAGGGCTCGATGCTACCATCGGGTATGCCTTCAAGGCTAACAATAATTTGAAGATTGTGGAGCATTTTAGAAGCCTGGGATGTGTCGCTGTTGTTGTTAGTGGGAACGAATTGAAATTGGCAGAGCGGGCTGGCTTCGACATGACAAGGTGTGTATTCAACGGAAATGGGAAAGTTTTAAGTGAGCTGGTTGTGGCGGCACAGAAAGGAGCATTGGTGAATGTAGAAAGTGAGTTTGATATAGAACTTCTTGTGATGTCTGCAAGAATTGCAGGAGACAAGATTCGTGTACTACTTCGCATCAATCCAGATGTGGATCCTCAGGTGCACCCTTA

Ace file of the UniGene biog3_v1.0_unigene15193

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5128	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Diaminopimelate decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9RH82_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	diaminopimelate decarboxylase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:4.1.1.2-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	lysine biosynthetic process via diaminopimelate	GO:0009089	Biological Process	82%
Blast2go	diaminopimelate decarboxylase activity	GO:0008836	Molecular Function	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	0.0	-
Sma3	Diaminopimelate decarboxylase, LysA	IPR002986	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQH1

Fln msg: Distance to subject end: 259 aas, your sequence is shorter than subject: 171 - 488

Fln protein: NVIILILMCTKHCFSRGEDGYLYCEGVKVQDVMDSVERTPFYLYSKTQLTRNFEAYLTAVEGLDATIGYAFKANNNLKIVEHFRSLGCVAVVVSGNELKLAERAGFDMTRCVFNGNGKVLSELVVAAQKGALVNVESEFDIELLVMSARIAGDKIRVLLRINPDVDPQVHP

Protein Length: 172

Fln nts: AATGTAATAATACTAATACTAATGTGTACTAAGCATTGTTTCAGCAGAGGAGAAGATGGTTACCTGTACTGTGAAGGTGTGAAGGTACAGGATGTAATGGATTCTGTGGAGCGGACTCCCTTCTATTTGTACAGTAAAACCCAACTAACCAGAAATTTCGAAGCCTATTTGACAGCAGTGGAAGGGCTCGATGCTACCATCGGGTATGCCTTCAAGGCTAACAATAATTTGAAGATTGTGGAGCATTTTAGAAGCCTGGGATGTGTCGCTGTTGTTGTTAGTGGGAACGAATTGAAATTGGCAGAGCGGGCTGGCTTCGACATGACAAGGTGTGTATTCAACGGAAATGGGAAAGTTTTAAGTGAGCTGGTTGTGGCGGCACAGAAAGGAGCATTGGTGAATGTAGAAAGTGAGTTTGATATAGAACTTCTTGTGATGTCTGCAAGAATTGCAGGAGACAAGATTCGTGTACTACTTCGCATCAATCCAGATGTGGATCCTCAGGTGCACCCTTA

Fln Alignment:

biogeco3_mira_c10037___KHCFSRGEDGYLYCEGVKVQDVMDSVERTPFYLYSKTQLTRNFEAYLTAVEGLDATIGYAFKANNNLKIVEHFRSLGCVAVVVSGNELKLAERAGFDMTRCVFNGNGKVLSELVVAAQKGALVNVESEFDIELLVMSARIAGDKIRVLLRINPDVDPQVHP
C0PQH1__________________QHCFRKNRDGFMYCEGVRLQDVIDTMERRPFYLYSKPQITRNYEAYENALKGLDSIIGYAVKANNNLKILEHLRSLGSGAVLVSGNELRLALNAGFDPSRCIFNGNGKLLDDLVLAANEGVLVNIDSEFDLENIVEAAKIAKKKVQVLLRINPDVDPEVHP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
124	33	66			0.997461
125	33			66	0.997461
127		66	33		0.997464
229		75		25	0.996481
234	80			20	0.995499
249		25	75		0.996473
290		33		66	0.997452
325	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain