SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15185

Length: 217 nt

UniGene Fasta

>biog3_v1.0_unigene15185
TTCTTTGTTGGAAATATTTTACGAATCAGTGGGAAGAAATTGTATGCTACTGTTAAATGTGCCACCAAATAGCACAGGTCTTCTTGCTGAAGAAGATGTCCATGTGCTTCGTCAATTCAAAGATATTCTTACTTCAATATTTTCTATTAATTTAGCTGGAAATGCTGTTGTCACTGCAAGTAGTGTTCGTGGAAGCAGTTCCCAATTTGGACCAAGC

Ace file of the UniGene biog3_v1.0_unigene15185

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene814	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-L-fucosidase 1 n=3 Tax=Andropogoneae RepID=B6UDD6_MAIZE	-	-	58%
FL-Next	sp=Alpha-L-fucosidase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	alpha-l-fucosidase 1	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-L-fucosidase.	EC:3.2.1.51	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	glycoprotein catabolic process	GO:0006516	Biological Process	73%
Blast2go	primary metabolic process	GO:0044238	Biological Process	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	alpha-L-fucosidase activity	GO:0004560	Molecular Function	73%
Blast2go	vacuole	GO:0005773	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Coagulation factor 5/8 C-terminal type domain	IPR000421	-	-
Sma3	Glycoside hydrolase, family 29	IPR000933	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 29, conserved site	IPR018526	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GW72

Fln msg: Distance to subject end: 136 aas, your sequence is shorter than subject: 72 - 506

Fln protein: SLLEIFYESVGRNCMLLLNVPPNSTGLLAEEDVHVLRQFKDILTSIFSINLAGNAVVTASSVRGSSSQFGPS

Protein Length: 73

Fln nts: TTCTTTGTTGGAAATATTTTACGAATCAGTGGGAAGAAATTGTATGCTACTGTTAAATGTGCCACCAAATAGCACAGGTCTTCTTGCTGAAGAAGATGTCCATGTGCTTCGTCAATTCAAAGATATTCTTACTTCAATATTTTCTATTAATTTAGCTGGAAATGCTGTTGTCACTGCAAGTAGTGTTCGTGGAAGCAGTTCCCAATTTGGACCAAGC

Fln Alignment:

biogeco3_mira_c10006___LLEIFYESVGRNCMLLLNVPPNSTGLLAEEDVHVLRQFKDILTSIFSINLAGNAVVTASSVRG-SSSQFGP
Q8GW72__________________LLDIYYNSVGRNCLFLLNVPPNSSGLISEQDIKVLEEFSEMKNSIFSNNLARKAFVNSSSIRGDQSSQFGP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain