SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15184

Length: 254 nt

UniGene Fasta

>biog3_v1.0_unigene15184
AATGTAAAGTGAAGGAACAACAAGGGCAAATGGGGAAAAAGTTACATACGGTTGCCAAGACAGCTGGCATGCATCACAGTGAATGGGTTGAGAATGCTGATCGTTGGGTGGCTGGCTTTTTAGAAAAGTTTGAAGAGGGGTGTCATATGATGGAAACAGCAATTAAAGACAAAATACAAGAGAGCCTGAAGAGGCAGAACTCAAGAAGCCCATCACCTTCAAAAATGCTGGAGAACGCAGTGCAGTAGCATAAG

Ace file of the UniGene biog3_v1.0_unigene15184

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5888	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T9P1_VITVI	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	choline-phosphate cytidylyltransferase b-like	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Nucleotidyltransferases.	EC:2.7.7.-	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	86%
Blast2go	Lipopolysaccharide biosynthesis	00540	86%
Blast2go	Biosynthesis of siderophore group nonribosomal peptides	01053	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	biosynthetic process	GO:0009058	Biological Process	0.0	86%
Blast2go	nucleotidyltransferase activity	GO:0016779	Molecular Function	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF9

Fln msg: your sequence is shorter than subject: 82 - 315

Fln protein: CKVKEQQGQMGKKLHTVAKTAGMHHSEWVENADRWVAGFLEKFEEGCHMMETAIKDKIQESLKRQNSRSPSPSKMLENAVQ*

Protein Length: 83

Fln nts: AATGTAAAGTGAAGGAACAACAAGGGCAAATGGGGAAAAAGTTACATACGGTTGCCAAGACAGCTGGCATGCATCACAGTGAATGGGTTGAGAATGCTGATCGTTGGGTGGCTGGCTTTTTAGAAAAGTTTGAAGAGGGGTGTCATATGATGGAAACAGCAATTAAAGACAAAATACAAGAGAGCCTGAAGAGGCAGAACTCAAGAAGCCCATCACCTTCAAAAATGCTGGAGAACGCAGTGCAGTAG___CATAAG

Fln Alignment:

biogeco3_mira_c10005___KVKEQQGQMGKKLHTVAKTAGMHHSEWVENADRWVAGFLEKFEEGCHMMETAIKDKIQESLKRQNSRSPSPSKML
A9NUF9__________________RVREQQEQMGKKLHTVAKTAGMHHSEWVENADRLVAGFLEKFEEGCHMMETAIKEKIQESLKRQNSRSPSPSKMV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain