SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15163

Length: 432 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15163
GATTGGCTCAGGTAGTCAACATTCTCATACAGATGCAAGACAGCAAAGCCAAAGTACAAGCAACTCCTATGGCATTGATGCGACTCATATTATTGTGGATGAAATCCATGAACGAGATCGCTTTGCTGATTTTATGCTGATTATACTCAGAGATTTGCTTCCTTCTCGGCCAGATTTGCGCCTGATATTAATGAGCGCCACTCTTGATGCCGAATTGTTTTCAAAGTATTTCAATGGTTGTCCAATCATTAATGTCCCTGGGTTCACTTACCCGGTCCGCACATATTATTTACAGGATGTACTTGCTCTTGTAGAATCTGGGATGGATGAGAAACAGTTAACTGATCATAATAGTCAAAATTTGGCAAGTTGCAAGACCCCATCACTGACTCAGGAAGACACGAGTGCTATGGATGAGGCTATCACTACATT

Ace file of the UniGene biog3_v1.0_unigene15163 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15184	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb\|AEC08442.1\| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana]	-	-	50%
FL-Next	sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress).	-	-	48%
Blast2go	nuclear deih-boxhelicase	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	70%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22899

Fln msg: Distance to subject end: 427 aas, your sequence is shorter than subject: 143 - 729

Fln protein: IGSGSQHSHTDARQQSQSTSNSYGIDATHIIVDEIHERDRFADFMLIILRDLLPSRPDLRLILMSATLDAELFSKYFNGCPIINVPGFTYPVRTYYLQDVLALVESGMDEKQLTDHNSQNLASCKTPSLTQEDTSAMDEAITT

Protein Length: 144

Fln nts: GATTGGCTCAGGTAGTCAACATTCTCATACAGATGCAAGACAGCAAAGCCAAAGTACAAGCAACTCCTATGGCATTGATGCGACTCATATTATTGTGGATGAAATCCATGAACGAGATCGCTTTGCTGATTTTATGCTGATTATACTCAGAGATTTGCTTCCTTCTCGGCCAGATTTGCGCCTGATATTAATGAGCGCCACTCTTGATGCCGAATTGTTTTCAAAGTATTTCAATGGTTGTCCAATCATTAATGTCCCTGGGTTCACTTACCCGGTCCGCACATATTATTTACAGGATGTACTTGCTCTTGTAGAATCTGGGATGGATGAGAAACAGTTAACTGATCATAATAGTCAAAATTTGGCAAGTTGCAAGACCCCATCACTGACTCAGGAAGACACGAGTGCTATGGATGAGGCTATCACTACATT

Fln Alignment:

biogeco3_mira_c9934___IIVDEIHERDRFADFMLIXXXXXXXXXXXXXXXLMSATLDAELFSKYFNGCPIINVPGFTYPVRTYYLQD
O22899__________________IILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVEIFYTQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain