SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15162

Length: 244 nt

UniGene Fasta

>biog3_v1.0_unigene15162
CATACAATCAAGCTCTCACAGATTTGAAAAACAATGGTGATAAGGAGAGACTTCCTCCAGGCATCGGATCTGTTTCTGTACTAGGTGGTGAGTATGACAGTGACCGAAAGATTGATGAGTTGAGGCAGCTTTATAGAGCCTATGCGACTGAAGCATTTTCTAGTGGTCGCCTTGAGGATGATAAGGTTTCTGCATTGAACCAGCTGAAAAATATATTTAGCTTAGGAAATCGTGAAACTACATT

Ace file of the UniGene biog3_v1.0_unigene15162

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9019	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	chloroplast inner envelope protein, 110 kD (IEP110) [Pisum sativum]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	79%
Blast2go	chloroplast organization	GO:0009658	Biological Process	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	Tic complex	GO:0031897	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM18

Fln msg: Distance to subject end: 553 aas, your sequence is shorter than subject: 80 - 1017

Fln protein: YNQALTDLKNNGDKERLPPGIGSVSVLGGEYDSDRKIDELRQLYRAYATEAFSSGRLEDDKVSALNQLKNIFSLGNRETT

Protein Length: 81

Fln nts: CATACAATCAAGCTCTCACAGATTTGAAAAACAATGGTGATAAGGAGAGACTTCCTCCAGGCATCGGATCTGTTTCTGTACTAGGTGGTGAGTATGACAGTGACCGAAAGATTGATGAGTTGAGGCAGCTTTATAGAGCCTATGCGACTGAAGCATTTTCTAGTGGTCGCCTTGAGGATGATAAGGTTTCTGCATTGAACCAGCTGAAAAATATATTTAGCTTAGGAAATCGTGAAACTACATT

Fln Alignment:

biogeco3_mira_c9926___YNQALTDLKNNGDKERLPPGIGSVSVLGGEYDSDRKIDELRQLYRAYATEAFSSGRLEDDKVSALNQLKNIFSLGNRET
B8LM18__________________YNQALTDLRNNADKEKLPPGIGSVSVLGGEYDSDRKIDELRQLYRAYVTEAFSSGRLEDDKVAALNQLKNIFSLGNRET

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
209			66	33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain