SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15158

Length: 236 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15158
GGCTTATTTCTTGCGGAGATGATTGCACAGTTAGACTATGGGATATCCCAGTTGCTGGCATTGGGGAATCAAGTTATGGCTCACAGAATGTTCAAAAGCCACTAGCAACCTATGTGGGAAAAAATTCTTTCAGGGCTGTAGATTACCAGTGGGATAGTAATGTGTTTGCAACTGGTGGGGCTCAAGTTGACATTTGGGATCATGACAGGTCAGAACCGATAAACAGTTTTGACATT

Ace file of the UniGene biog3_v1.0_unigene15158 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19830	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	WD repeat and SOF domain-containing protein 1 [Arabidopsis thaliana] gb\|AAK50083.1\|AF372943_1 AT4g28450/F20O9_130 [Arabidopsis thaliana] gb\|AAK73982.1\| AT4g28450/F20O9_130 [Arabidopsis thaliana] gb\|AAN28840.1\| At4g28450/F20O9_130 [Arabidopsis thaliana] gb	-	-	66%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	67%
Blast2go	ddb1- and cul4-associated factor	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	84%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Ribosomal protein S19/S15	IPR002222	-	-
Sma3	Sof1-like protein	IPR007287	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TY87

Fln msg: Distance to subject end: 251 aas, your sequence is shorter than subject: 78 - 452

Fln protein: LISCGDDCTVRLWDIPVAGIGESSYGSQNVQKPLATYVGKNSFRAVDYQWDSNVFATGGAQVDIWDHDRSEPINSFDI

Protein Length: 79

Fln nts: GGCTTATTTCTTGCGGAGATGATTGCACAGTTAGACTATGGGATATCCCAGTTGCTGGCATTGGGGAATCAAGTTATGGCTCACAGAATGTTCAAAAGCCACTAGCAACCTATGTGGGAAAAAATTCTTTCAGGGCTGTAGATTACCAGTGGGATAGTAATGTGTTTGCAACTGGTGGGGCTCAAGTTGACATTTGGGATCATGACAGGTCAGAACCGATAAACAGTTTTGACATT

Fln Alignment:

biogeco3_mira_c9920___LISCGDDCTVRLWDIPVAGIGESSYGSQNVQKPLATYVGKNSFRAVDYQWDSNVFATGGAQVDIWDHDRSEPINSF
A9TY87__________________LVSCGDDCTVRLWEVPSAFTGESTGDEIDIIEPVATYQGKNAFRTVDHRWDSQVFATGGAQVDVWDHNRSEPINTF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
119		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain