SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15125

Length: 416 nt

UniGene Fasta

>biog3_v1.0_unigene15125
AATGTGTTTCAGTAATTGCTCTGCCCTCAAGGTATTGAATGTAGCAAAAAATAATTTGGAAGGGCGGATACCGATGGAATTCGGAAACTTGAAGAAACTCCAGGTATTGCAGATCAATTACAACAGGTTAATTGGAAATGTTCCCTCATCCCTCCGAAATTGCACAATGTTGGAAATTTTGGAATTGAGTGGAAACAGCTTATCAGGCAAAGTCCCTGAATGGATCTCCGATCTTTCAAAGCTCCGCTTACTTGTCCTCAGATCAAATAATTTAGAAGGTGAGATACCTATCCAGATTTGCGACCTTCAACAACTCCAAATTCTGGATCTGGCAATAAACCATGTGTCAGGTTCGATACCACCATGTATCTCAAACTTGTCAGCATTGAGGAATAAAGATTTCGCAAGATCACCGC

Ace file of the UniGene biog3_v1.0_unigene15125

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8864	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	serine-threonine protein plant-	-	-	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 91 aas, your sequence is shorter than subject: 138 - 818

Fln protein: MCFSNCSALKVLNVAKNNLEGRIPMEFGNLKKLQVLQINYNRLIGNVPSSLRNCTMLEILELSGNSLSGKVPEWISDLSKLRLLVLRSNNLEGEIPIQICDLQQLQILDLAINHVSGSIPPCISNLSALRNKDFARSP

Protein Length: 139

Fln nts: AATGTGTTTCAGTAATTGCTCTGCCCTCAAGGTATTGAATGTAGCAAAAAATAATTTGGAAGGGCGGATACCGATGGAATTCGGAAACTTGAAGAAACTCCAGGTATTGCAGATCAATTACAACAGGTTAATTGGAAATGTTCCCTCATCCCTCCGAAATTGCACAATGTTGGAAATTTTGGAATTGAGTGGAAACAGCTTATCAGGCAAAGTCCCTGAATGGATCTCCGATCTTTCAAAGCTCCGCTTACTTGTCCTCAGATCAAATAATTTAGAAGGTGAGATACCTATCCAGATTTGCGACCTTCAACAACTCCAAATTCTGGATCTGGCAATAAACCATGTGTCAGGTTCGATACCACCATGTATCTCAAACTTGTCAGCATTGAGGAATAAAGATTTCGCAAGATCACCGC

Fln Alignment:

biogeco3_mira_c9836___SNCSALKVLNVAKNNLEGRIPMEFGNLKKLQVL-----------------------------------QINYNRLIGNVPSSLRNCTMLEILELSGNSLSGKVPEWISDLSKLRLLVLRSNNLEGEXXXXXXXXXXXXXXXXAINHVSGSIP
B8LQX6__________________TNLTQLQVLDLSNNRISGRIPRDLERLQGFKILASSKLSSNTLYEDLDIVIKGFEYTLTYVLATNTIFDLSSNNLTGEIPASIGNLSTLRLLNLSRNQLEGKIPASLGQISTLEQLDLANNYFSGKIPQELSNLTMLASLNVSSNRLCGRIP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
164	33	66			0.997464
167		66	33		0.997464
168	66			33	0.997464
202	33		66		0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain