SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15111

Length: 177 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15111
AATGTGCTTGCGCTCCTGACTGCGCTAGCAGGCGTTCGATATAGCCAAATTTGAGGAGGGGAAGAGCGTGTTCATTGTGGGAGGAGCGGGCGGAGTGGGCAGTCTGGCCATTCAGCTGGCGAGGCATGTCTATGGAGCTTCCAGAATCGTTTCCACGTCTAGCACTGTGAAGCTCGA

Ace file of the UniGene biog3_v1.0_unigene15111 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8224	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	quinone oxidoreductase-like protein [Arabidopsis thaliana] sp\|Q9ZUC1.2\|QORL_ARATH RecName: Full=Quinone oxidoreductase-like protein At1g23740, chloroplastic; Flags: Precursor gb\|AAL06488.1\|AF411799_1 At1g23740/F5O8_27 [Arabidopsis thaliana] gb\|AAM16188.1\|	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	quinone oxidoreductase-like protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	77%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NR79

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 121 aas, your sequence is shorter than subject: 58 - 313

Fln protein: MCLRS*LR*QAFDIAKFEEGKSVFIVGGAGGVGSLAIQLARHVYGASRIVSTSSTVKL

Protein Length: 59

Fln nts: AATGTGCTTGCGCTCCTGACTGCGCTAGCAGGCGTTCGATATAGCCAAATTTGAGGAGGGGAAGAGCGTGTTCATTGTGGGAGGAGCGGGCGGAGTGGGCAGTCTGGCCATTCAGCTGGCGAGGCATGTCTATGGAGCTTCCAGAATCGTTTCCACGTCTAGCACTGTGAAGCTCGA

Fln Alignment:

biogeco3_mira_c9775___QAFDIAKFEEGKSVFIVGGAGGVGSLAIQLARHVYGASRIVSTSSTVKL
A9NR79__________________QAFDIAKFEKGKSVFIVGGAGGVGSLAIQLARHVYGASRIVSTASTGKL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
107	33			33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain