SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15098

Length: 317 nt

UniGene Fasta

>biog3_v1.0_unigene15098
AATGTCTCTCATAAAGGAATTAACATTAAATTTGGAGAGTGCTAACACTTCAGAAAGGCAAGTAACAGTTGACTCTGAATTTGCAAGGCCAGGAGTTGTGGAGAAGGACAATGCTGATTTGGATGAAGAAAATATCATTATGAAGACACAGCTAGAGGTTGAAAAGGAAGAAATGCATCAGTAATCTTAGAACTACAAGCTGTCAAACAGGAGCTTGAGCACGATATTTCAGAATACCTATGTTCAGTACATTGAGGGACATTGCTCTTGAAATGCAGTTGATGCATTGGCAGCTTCTGAAGATGTGCAGAAACATT

Ace file of the UniGene biog3_v1.0_unigene15098

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30197	2/3
SustainPine v2.0	sp_v2.0_unigene34858	1/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB38797.1\| putative protein [Arabidopsis thaliana] emb\|CAB80056.1\| putative protein [Arabidopsis thaliana] gb\|ABE66107.1\| hypothetical protein At4g33390 [Arabidopsis thaliana] gb\|AEE86219.1\| uncharacteri	-	-	5.0e-11	45%
FL-Next	tr=Paramyosin, putative; Ricinus communis (Castor bean).	-	-	0.0	37%
Blast2go	protein weak chloroplast movement under blue light 1-like	-	-	3.79772e-13	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast accumulation movement	GO:0009904	Biological Process	3.79772e-13	59%
Blast2go	chloroplast avoidance movement	GO:0009903	Biological Process	3.79772e-13	59%
Blast2go	protein binding	GO:0005515	Molecular Function	3.79772e-13	59%
Blast2go	cytosol	GO:0005829	Cellular Component	3.79772e-13	59%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.79772e-13	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9R7C9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 473 aas, your sequence is shorter than subject: 90 - 879

Fln protein: MSLIKELTLNLESANTSERQVTVDSEFARPGVVEKDNADLDEENIIMKTQLEVEKEEMHQ*S*NYKLSNRSLSTIFQNTYVQYIEGHCS*

Protein Length: 91

Fln nts: AATGTCTCTCATAAAGGAATTAACATTAAATTTGGAGAGTGCTAACACTTCAGAAAGGCAAGTAACAGTTGACTCTGAATTTGCAAGGCCAGGAGTTGTGGAGAAGGACAATGCTGATTTGGATGAAGAAAATATCATTATGAAGACACAGCTAGAGGTTGAAAAGGAAGAAATGCATCAGTAATCTTAGAACTACAAGCTGTCAAACAGGAGCTTGAGCACGATATTTCAGAATACCTATGTTCAGTACATTGAGGGACATTGCTCTTGAAATGCAGTTGATGCATTGGCAGCTTCTGAAGATGTGCAGAAACATT

Fln Alignment:

biogeco3_mira_c9729___LIKELTLNLESANTSERQVTVDSEFARPGVVEKDNADLDEENIIMKTQLEVEKEEMHQ*S*NYKLSNRSLSTIFQNTYVQYI--EGHCS*NAVDALAASEDVQK
B9R7C9__________________LIEELKLNLERAQTEEHQAKQDSELARLRVEELEQGIADEASVAAKAQLEVAKARHTAAISELKSVSDELQTL-RKEYASLIAEKDEASKKAEEAVSASREVEK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain