SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15058

Length: 380 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15058
GCCACCAAGCTTTCAGATATGATAACAGAAGTAATTATGATGAAGGTGAGCATGGGGGCCATAATGAGAGACATCATACATCAAGGTCATACTATAAAGATGGAGGAAATCGAATACCACGCAGTACACATCCTACAAGAGAGGGTGAAAGGATTGCTGACCAAAAGCGACATACAATAGAGGAGGTTGGTGAACACTCTGATGTCGAAACAAAGAAGCAAAACCTGCCTAGTATTTTGGGTCCAGGACCAACAGAACTGAGGTTTCAACAGCCCATTGATAATCAACAGGACTTAAAAGATTGTAGACAAAATGAGAGAATCTTGGATTGATTTGCCTAATAGTTTCAATGCATCTTAATTGAAAGGGAGATATACATT

Ace file of the UniGene biog3_v1.0_unigene15058 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10287	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	unknown [Picea sitchensis]	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	mRNA capping	GO:0006370	Biological Process	0.0	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	mRNA capping enzyme, large subunit	IPR004971	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUG9

Fln msg: your sequence is shorter than subject: 110 - 652

Fln protein: HQAFRYDNRSNYDEGEHGGHNERHHTSRSYYKDGGNRIPRSTHPTREGERIADQKRHTIEEVGEHSDVETKKQNLPSILGPGPTELRFQQPIDNQQDLKDCRQNERILD*

Protein Length: 111

Fln nts: GCCACCAAGCTTTCAGATATGATAACAGAAGTAATTATGATGAAGGTGAGCATGGGGGCCATAATGAGAGACATCATACATCAAGGTCATACTATAAAGATGGAGGAAATCGAATACCACGCAGTACACATCCTACAAGAGAGGGTGAAAGGATTGCTGACCAAAAGCGACATACAATAGAGGAGGTTGGTGAACACTCTGATGTCGAAACAAAGAAGCAAAACCTGCCTAGTATTTTGGGTCCAGGACCAACAGAACTGAGGTTTCAACAGCCCATTGATAATCAACAGGACTTAAAAGATTGTAGACAAAATGAGAGAATCTTGGATTGA___TTTGCCTAATAGTTTCAATGCATCTTAATTGAAAGGGAGATATACATT

Fln Alignment:

biogeco3_mira_c9593___HQAFRYDNRSNYDXXXXXXXXXXXHTSRSYYKDGGNRIPRSTHPTREGERIADQKRHTIEEVGEHSDVETKKQNLPSILGPGPTELRFQQPIDNQQDLKDCRQNERILD
A9NUG9__________________HQAFRYDSRSGYDEGEHGSHNERHHTSRSYYKDGGNRIPRNMHPTREGEKIVDQKRQTIEEIGEQSDVETKNQNLPSILGPGPTELRFQQPNDNEQDLNDCRQNERSLD

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
66	25	75			0.996481
69			33	66	0.997452
159	25			75	0.996473
160	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain