SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15005

Length: 2753 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15005
AATGTCTTAAAGCAGTCGGTATCAACGCAGAGTACGCGGGATACTCTCCTTCAATCCTTTGAAGGAACAGCAGGAATCTATCTGTTTACTAACGGAATCTCTGCTGGTCTCCGTCTCTGTCTCTGGTTTGCAGCACCTTTTCTTCGAAGGTAAGTTAGGACTTTTCAAGCCCGAAAGCAATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGCCCGAAGAGAGAGCTCAAGTTCGCTTTGGAGTCCTTCTGGGATGGAAAAACATCTGCTGCGGCTCTCGAGACTGTGGCTAAGGAACTGAGGTCTTCGATCTGGAAGCAGATGGTAGCTGCCGGAGTCAAATTGATTCCCAGCAACACTTTCTCGTACTACGATCAAGTTCTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCTAGGTATGGCTTCGCTGGCGGTGAGATTGGATTCGACACTTACTTTTCCATGGCCCGAGGAAACGCCACACTCCCTGCAATGGAGATGACCAAGTGGTTTGACACCAACTATCACTACATCGTTCCAGAGTTGGGCCCGGAGATCAAATTTGCTTACTCATCACACAAGGCAGTAGCAGAATACAAGGAGGCTAAAGAGCTGGGCATTGATACTGTGCCCGTGATTGTAGGACCCGTGTCATACTTGCTATTGTCTAAGCCCGCAAAAGGCGTGGCAAAGACCTTCAATCTTCTTACTCTTCTTGATTCAATCCTTCCAATTTACAAGCAAGTTGTGTCTGAGTTGGAGGCAGCTGGTGCAACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTCATCAGTTGGAAGCCTTTTCGAAGGCATATTCTTACTTGGAAGCATCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGTTGAGACTTACAAGGCCATTACTGGCTTGAAGGGTATCTCTGCTATTGGGTTTGATCTTATCCGTGGAACAAAGACTCTCGAACTCATCAAGGAGATTGGTTTCCCTGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAATATTTGGGCCAATGATCTGGCTGCTTCATTGACCGTTTTGGAAAGCCTTGAGAGCATAGTTGGGAAAGATAAACTAGTTGTCTCTACTTCCTGCTCCCTCTTGCACACGGCTGTGGATTTGGAAAATGAAACAAAGCTTGACAGTGAAATTAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTATTGAAGTGGATGCCTTAGCCAAGGCATTGGCTGGTCAGAAAGATGAGGCATTCTTTGCGGTCAACGCATCTGCACTGGCTTCAAGGAGGACGTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCTGCAGCGTTGAAGACTTCTGACCATCGACGAGCTACGCCAGTAAACATTCGTCTTGAGCAACAACAGAAAAAGTTGAATCTTCCAATTCTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGTAGGGTTCGTCGTGAATTCAAGATAAACAAGATTTCAGAGGAAGAATATGTTAGCTCCATCAAGGAAGAAATTGCCAAGGTTGTCAAATTGCAAGAGGACCTTGATATTGATGTGCTTGTGCACGGAGAACCCGAGAGGAATGACATGGTGGAGTACTTTGGAGAACAGCTTCAGGGCTTTGCATTTACAGTCAATGGTTGGGTACAGTCTTATGGATCCCGTTGTGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGCCCAAAGGCTATGACTGTCTTTTGGTCCAAGATGGCTCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACTTGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGACTTGGAAGCGGGTGGAATTCAGGTTATTCAAATTGACGAGGCTGCTCTTAGAGAAGGATTGCCTCTACGCAAGGCTGAACATGCTTATTACCTGGATTGGGCTGTACACGGATTCCGCATCACTAACTGTGGTGTGCAAGATACAACTCAGATCCATACCCACATGTGCTACTCTAACTTCAACGATATTATTCATTCAATCATTGATATGGATGCCGATGTAATCACCATTGAGAATTCTCGTTCCGATGAGAAACTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGTGCCGGAATTGGCCCTGGTGTCTATGACATTCACTCTCCTCGCATTCCAAGCGTAGAAGAAATTGCAGATCGTATCAGCAAGATGCTTGCTGTGCTCGAAACAAACATACTATGGGTTAACCCTGACTGTGGTCTGAAGACCAGGAAGTACACCGAGGTCATTCCTGCCCTGACCAACGTGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGAGGCCATCCCAGCTATCTTCAAGTACTATGAGTGTTGGAATTTTTTTGTGGTTCTTTTCATAAATAACTTTTGTGTTTCTTATTTTCATTCTCATAAGTAGTTGATGTGGCTGAGTGCTCTCAAGGCAGGCTTTGGAGCCACATTTCTCCATCCAGAATATTTTCTTATTTACTAGTGAATATTAATTGAGTAAACCCTCAAAAGTGTCGGTGCCTCCATTCTCTTTGAAAGGCGAGTTATTAAATGAAGTTTTTCTATGAAACATTGGACATT

Ace file of the UniGene biog3_v1.0_unigene15005 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6428	1/376
SustainPine v2.0	sp_v2.0_unigene24577	316/376
SustainPine v2.0	sp_v2.0_unigene60355	54/376
SustainPine v2.0	sp_v2.0_unigene69286	1/376
SustainPine v2.0	sp_v2.0_unigene83367	1/376

Source	Descriptions	Term	Type	Identity
AutoFact	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=5 Tax=core eudicotyledons RepID=METE_CATRO	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	5-methyltetrahydropteroyltriglutamate-homocysteine expressed	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal	IPR013215	-	-
Sma3	Methionine synthase, vitamin-B12 independent	IPR002629	-	-
Sma3	Cobalamin-independent methionine synthase	IPR006276	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPY2

Fln msg:

Fln protein: MASHVVGYPRMGPKRELKFALESFWDGKTSAAALETVAKELRSSIWKQMVAAGVKLIPSNTFSYYDQVLDTTAMLGAVPPRYGFAGGEIGFDTYFSMARGNATLPAMEMTKWFDTNYHYIVPELGPEIKFAYSSHKAVAEYKEAKELGIDTVPVIVGPVSYLLLSKPAKGVAKTFNLLTLLDSILPIYKQVVSELEAAGATWVQFDEPSLVMDLEAHQLEAFSKAYSYLEASSLGVNLLVETYFADIPVETYKAITGLKGISAIGFDLIRGTKTLELIKEIGFPADKILFAGVVDGRNIWANDLAASLTVLESLESIVGKDKLVVSTSCSLLHTAVDLENETKLDSEIKSWLAFAAQKLIEVDALAKALAGQKDEAFFAVNASALASRRTSPRVTNEAVQKAAAALKTSDHRRATPVNIRLEQQQKKLNLPILPTTTIGSFPQTVELRRVRREFKINKISEEEYVSSIKEEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSKMAQSMTARPMKGMLTGPVTILNWSFVRNDQPRSETCMQIALAIKDEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAYYLDWAVHGFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSVEEIADRISKMLAVLETNILWVNPDCGLKTRKYTEVIPALTNVVAAAKLLRAQLASAK*

Protein Length: 768

Fln nts: AATGTCTTAAAGCAGTCGGTATCAACGCAGAGTACGCGGGATACTCTCCTTCAATCCTTTGAAGGAACAGCAGGAATCTATCTGTTTACTAACGGAATCTCTGCTGGTCTCCGTCTCTGTCTCTGGTTTGCAGCACCTTTTCTTCGAAGGTAAGTTAGGACTTTTCAAGCCCGAAAGCA_-_ATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGCCCGAAGAGAGAGCTCAAGTTCGCTTTGGAGTCCTTCTGGGATGGAAAAACATCTGCTGCGGCTCTCGAGACTGTGGCTAAGGAACTGAGGTCTTCGATCTGGAAGCAGATGGTAGCTGCCGGAGTCAAATTGATTCCCAGCAACACTTTCTCGTACTACGATCAAGTTCTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCTAGGTATGGCTTCGCTGGCGGTGAGATTGGATTCGACACTTACTTTTCCATGGCCCGAGGAAACGCCACACTCCCTGCAATGGAGATGACCAAGTGGTTTGACACCAACTATCACTACATCGTTCCAGAGTTGGGCCCGGAGATCAAATTTGCTTACTCATCACACAAGGCAGTAGCAGAATACAAGGAGGCTAAAGAGCTGGGCATTGATACTGTGCCCGTGATTGTAGGACCCGTGTCATACTTGCTATTGTCTAAGCCCGCAAAAGGCGTGGCAAAGACCTTCAATCTTCTTACTCTTCTTGATTCAATCCTTCCAATTTACAAGCAAGTTGTGTCTGAGTTGGAGGCAGCTGGTGCAACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTCATCAGTTGGAAGCCTTTTCGAAGGCATATTCTTACTTGGAAGCATCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGTTGAGACTTACAAGGCCATTACTGGCTTGAAGGGTATCTCTGCTATTGGGTTTGATCTTATCCGTGGAACAAAGACTCTCGAACTCATCAAGGAGATTGGTTTCCCTGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAATATTTGGGCCAATGATCTGGCTGCTTCATTGACCGTTTTGGAAAGCCTTGAGAGCATAGTTGGGAAAGATAAACTAGTTGTCTCTACTTCCTGCTCCCTCTTGCACACGGCTGTGGATTTGGAAAATGAAACAAAGCTTGACAGTGAAATTAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTATTGAAGTGGATGCCTTAGCCAAGGCATTGGCTGGTCAGAAAGATGAGGCATTCTTTGCGGTCAACGCATCTGCACTGGCTTCAAGGAGGACGTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCTGCAGCGTTGAAGACTTCTGACCATCGACGAGCTACGCCAGTAAACATTCGTCTTGAGCAACAACAGAAAAAGTTGAATCTTCCAATTCTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGTAGGGTTCGTCGTGAATTCAAGATAAACAAGATTTCAGAGGAAGAATATGTTAGCTCCATCAAGGAAGAAATTGCCAAGGTTGTCAAATTGCAAGAGGACCTTGATATTGATGTGCTTGTGCACGGAGAACCCGAGAGGAATGACATGGTGGAGTACTTTGGAGAACAGCTTCAGGGCTTTGCATTTACAGTCAATGGTTGGGTACAGTCTTATGGATCCCGTTGTGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGCCCAAAGGCTATGACTGTCTTTTGGTCCAAGATGGCTCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACTTGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGACTTGGAAGCGGGTGGAATTCAGGTTATTCAAATTGACGAGGCTGCTCTTAGAGAAGGATTGCCTCTACGCAAGGCTGAACATGCTTATTACCTGGATTGGGCTGTACACGGATTCCGCATCACTAACTGTGGTGTGCAAGATACAACTCAGATCCATACCCACATGTGCTACTCTAACTTCAACGATATTATTCATTCAATCATTGATATGGATGCCGATGTAATCACCATTGAGAATTCTCGTTCCGATGAGAAACTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGTGCCGGAATTGGCCCTGGTGTCTATGACATTCACTCTCCTCGCATTCCAAGCGTAGAAGAAATTGCAGATCGTATCAGCAAGATGCTTGCTGTGCTCGAAACAAACATACTATGGGTTAACCCTGACTGTGGTCTGAAGACCAGGAAGTACACCGAGGTCATTCCTGCCCTGACCAACGTGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGA___GGCCATCCCAGCTATCTTCAAGTACTATGAGTGTTGGAATTTTTTTGTGGTTCTTTTCATAAATAACTTTTGTGTTTCTTATTTTCATTCTCATAAGTAGTTGATGTGGCTGAGTGCTCTCAAGGCAGGCTTTGGAGCCACATTTCTCCATCCAGAATATTTTCTTATTTACTAGTGAATATTAATTGAGTAAACCCTCAAAAGTGTCGGTGCCTCCATTCTCTTTGAAAGGCGAGTTATTAAATGAAGTTTTTCTATGAAACATTGGACATT

Fln Alignment:

biogeco3_mira_c9426___MASHVVGYPRMGPKRELKFALESFWDGKTSAAALETVAKELRSSIWKQMVAAGVKLIPSNTFSYYDQVLDTTAMLGAVPPRYGFAGGEIGFDTYFSMARGNATLPAMEMTKWFDTNYHYIVPELGPEIKFAYSSHKAVAEYKEAKELGIDTVPVIVGPVSYLLLSKPAKGVAKTFNLLTLLDSILPIYKQVVSELEAAGATWVQFDEPSLVMDLEAHQLEAFSKAYSYLEASSLGVNLLVETYFADIPVETYKAITGLKGISAIGFDLIRGTKTLELIKEIGFPADKILFAGVVDGRNIWANDLAASLTVLESLESIVGKDKLVVSTSCSLLHTAVDLENETKLDSEIKSWLAFAAQKLIEVDALAKALAGQKDEAFFAVNASALASRRTSPRVTNEAVQKAAAALKTSDHRRATPVNIRLEQQQKKLNLPILPTTTIGSFPQTVELRRVRREFKINKISEEEYVSSIKEEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSKMAQSMTARPMKGMLTGPVTILNWSFVRNDQPRSETCMQIALAIKDEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAYYLDWAVHGFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSVEEIADRISKMLAVLETNILWVNPDCGLKTRKYTEVIPALTNVVAAAKLLRAQLASAK
B8LPY2__________________MASHVVGYPRMGPKRELKFALESFWDGKSSAADLEAVAKGLRASIWKQMVAAGVKLIPSNTFSFYDQVLDTTAMLGAVPPRYSFAGGEIGFDTYFSMARGNATLPAMEMTKWFDTNYHYIVPELGPEIKFAYSSHKAVAEYKEAKELGIDTVPVIVGPVSYLLLSKPAKGVAKTFNLLSLLDAILPIYKQVVSELEAAGATFVQFDEPSLVMDLEAHQLEAFSKAYSYLDAASLGVNLLVETYFADIPVETYKTITGLKGISAIGFDFIRGSKTLGLIKEAGFPADKVLFAGVVDGRNIWANDLADSLSVLESLENIVGKDKLVVSTSCSLLHTAVDLVNETKLDSEIKSWLAFAAQKLIEVDALAKALAGQKDEAFFAANAAALASRRASPRVTNEAVQKAAAALKTSDHRRVTPVNVRLEQQQKKLNLPILPTTTIGSFPQTVELRRVRREYKINKISEDEYVSSIKEEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSKVAQSMTARPMKGMLTGPVTILNWSFVRNDQPRSETCMQIALAIKDEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAYYLDWAVHGFRITNSGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRISKMLAVLETNILWVNPDCGLKTRKYPEVVPALTNMVAAAKLLRAQLASAK

SNPs (tot: 82)

Position	A %	C %	G %	T %	Probability
96	33			66	0.997458
98		66	33		0.997458
99	66			33	0.997458
125		33		66	0.997455
169	25	75			0.996481
172		75	25		0.996481
173	75			25	0.996481
261	20		80		0.995493
264	80		20		0.995493
265			80	20	0.995493
309	16		83		0.994512
310		83	16		0.994512
311	83			16	0.994512
339	16		83		0.994512
340			83	16	0.994512
343	83			16	0.994512
588	9	90			0.999872
591		90		9	0.999872
731		96		3	0.991164
805	5			94	0.9982
813	5	94			0.998744
815		94		5	0.998744
877	87	12			0.999964
879			87	12	0.999964
880			87	12	0.999964
1144	5			95	0.997749
1146	5	95			0.997749
1217	9			90	0.999842
1218		9		90	0.999842
1325	11		88		0.991528
1548	5			94	0.997984
1551		94		5	0.997984
1647	85			14	0.999981
1648			85	14	0.999981
1731	11			88	0.991528
1734			88	11	0.991528
1735		88		11	0.991528
1747		12		87	0.992554
1748	12	87			0.992554
1750		87		12	0.992554
1776	14	71		14	0.984337
1779		85		14	0.993533
1780			85	14	0.993533
1790	14			85	0.993533
1791		85		14	0.993533
1792	85		14		0.993533
1793	85			14	0.993533
1865		16	83		0.994512
1866	16			83	0.994512
1880	11			88	0.991528
1883	88		11		0.991528
1884	88			11	0.991528
2191	11			88	0.999937
2192		11	88		0.999937
2195		5	83	11	0.999887
2299	16		83		0.994512
2300	16		83		0.994512
2301		83		16	0.994512
2302		83	16		0.994512
2303	83			16	0.994512
2325	50			50	1.0
2338	20	80			0.995493
2341			80	20	0.995493
2342		25		25	0.995533
2359	14		85		0.993533
2363			85	14	0.993533
2395	88	11			0.923564
2396	11	88			0.923564
2519			42	42	1.0
2549	12		87		0.992554
2561		62	37		1.0
2564	12		87		0.992554
2583	90	10			0.90298
2584	90	10			0.90298
2586	90		10		0.90298
2609	14		85		0.993533
2610		14	85		0.993533
2611	14	85			0.993533
2629	60	40			1.0
2669	25		75		0.996481
2670			75	25	0.996481
2671	75			25	0.996481

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain