SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14993

Length: 438 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14993
AATGTACAAATAGGGTTGGAGAAATCTATTAATACAGCAGCTCTAAGGTTTTCTTCCCCTCAAAATGAGTGGTTAGGGTTTCCAACAGTTACATTTTTGTAGGCAAACAGTTTCTGACGTGAAATCACGCTGCAAGCGACAATGCGGGCGGCTTCAATGATCAATCCCTCATTTGCAGGTGGATTTTTTGAATCGGTTTCCTCTTCTTATTCTCTAAAATTTCCACAAGCCTCGTGGGTTTTAGGACCGACACTGGGAAACCACAATGAAAGGCAAAAACATCTTCCATTAAGGGTTTCAAGGAAATCCAGAGGCGCCCAAGTGGTCACCTGCAGCGTTGCAACGATCAAACGCACCGGGCAGGAGAGAGTCGACATCTTGTCAGAGGCATTGCCCTTCATTCAGAAATTCCAAGGCAAGACCGTTGTAGTTAACATT

Ace file of the UniGene biog3_v1.0_unigene14993 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17089	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	N-acetylglutamate kinase n=2 Tax=Physcomitrella patens RepID=A0JC02_9BRYO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	acetylglutamate kinase	-	-	84%

Source	InterPros	Term	Type	Identity
Sma3	Acetylglutamate kinase	IPR004662	-	-
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3		IPR011148	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNX1

Fln msg: Distance to subject end: 253 aas, your sequence is shorter than subject: 99 - 352

Fln protein: MRAASMINPSFAGGFFESVSSSYSLKFPQASWVLGPTLGNHNERQKHLPLRVSRKSRGAQVVTCSVATIKRTGQERVDILSEALPFIQKFQGKTVVVNI

Protein Length: 100

Fln nts: AATGTACAAATAGGGTTGGAGAAATCTATTAATACAGCAGCTCTAAGGTTTTCTTCCCCTCAAAATGAGTGGTTAGGGTTTCCAACAGTTACATTTTTGTAGGCAAACAGTTTCTGACGTGAAATCACGCTGCAAGCGACA_-_ATGCGGGCGGCTTCAATGATCAATCCCTCATTTGCAGGTGGATTTTTTGAATCGGTTTCCTCTTCTTATTCTCTAAAATTTCCACAAGCCTCGTGGGTTTTAGGACCGACACTGGGAAACCACAATGAAAGGCAAAAACATCTTCCATTAAGGGTTTCAAGGAAATCCAGAGGCGCCCAAGTGGTCACCTGCAGCGTTGCAACGATCAAACGCACCGGGCAGGAGAGAGTCGACATCTTGTCAGAGGCATTGCCCTTCATTCAGAAATTCCAAGGCAAGACCGTTGTAGTTAACATT

Fln Alignment:

biogeco3_mira_c9388___MRAASMINPSFAGGFFESVSSSYSLKFPQASWVLGPTLGNHNERQKHLPLRVSRKSRGAQVVTCSVATIKRTGQERVDILSEALPFIQKFQGKTVVV
B8LNX1__________________MQAASMLNPSFVGGFFESVSSSYSLKFPQVSWVLGSTLGNPDERQKRLPIRVSRKSRGTQVVTCSVATTKYTGQERVDILAEALPFIQKFQGKTVVV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
253	75			25	0.99649
254	75			25	0.996483

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain