SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14963

Length: 234 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14963
TCTCGTGGCAAGAAGATTACTGGTTTTCAGTTTGCACCAGGAAACTCTCAAAAAGTATTGATAACATCTGCTGACTCACGAATTCGAGTTTTTGATGGGGTTGACCTTGTCCAAAAGTATAAAGGTTTTCGAAACACCAACAGTCAAATAGCTGCCTCATTTACCGCAAATGGAAAATATGTCATATCTACAAGTGAAGATTCATATGTGTATATTTGGAATTATGACTCTCCA

Ace file of the UniGene biog3_v1.0_unigene14963 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12955	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T7M5_RICCO	-	-	58%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	77%
Blast2go	wd repeat-containing protein 44-like	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	75%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	75%
Blast2go	heterotrimeric G-protein complex	GO:0005834	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9N1K2

Fln msg: Distance to subject end: 161 aas, your sequence is shorter than subject: 78 - 799

Fln protein: SRGKKITGFQFAPGNSQKVLITSADSRIRVFDGVDLVQKYKGFRNTNSQIAASFTANGKYVISTSEDSYVYIWNYDSP

Protein Length: 79

Fln nts: TCTCGTGGCAAGAAGATTACTGGTTTTCAGTTTGCACCAGGAAACTCTCAAAAAGTATTGATAACATCTGCTGACTCACGAATTCGAGTTTTTGATGGGGTTGACCTTGTCCAAAAGTATAAAGGTTTTCGAAACACCAACAGTCAAATAGCTGCCTCATTTACCGCAAATGGAAAATATGTCATATCTACAAGTGAAGATTCATATGTGTATATTTGGAATTATGACTCTCCA

Fln Alignment:

biogeco3_mira_c9295___KKITGFQFAPGNSQKVLITSADSRIRVFDGVDLVQKYKGFRNTNSQIAASFTANGKYVISTSEDSYVYIWNYDS
B9N1K2__________________KKITGFQFAPGSSSEVIVTSADSRIRVIDGVDLVHKFKGFRNTNSQISASLTANGKYVVSASEDSYVYVWKHEA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
58	33			66	0.997452
59	33			66	0.997452
61		33	33	33	0.997752
62		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain