SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14912

Length: 213 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14912
AATGTTCGGTTGGCGAAAGCACGGGCTCTGCGCAGGGGGATCTCCGGAGGCTCGCATTTACCCATGTTTGTTTTGTTCTAGGAAGTTCTACAGTTCTCAGGCTTTGGGAGGACACCAGAATGCTCACAAGAAGGAGAGAACCGCTGCAAGAAGAGCTCAGAGATCTCATATGAACATTCAGCAGAGGTTTTGTAGCCTGGCACCCTCACCGCC

Ace file of the UniGene biog3_v1.0_unigene14912 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22932	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S558_RICCO	-	-	7.0e-16	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	zinc finger	-	-	6.88158e-18	52%

Source	InterPros	Term	Type	Identity
Sma3	Histone H4	IPR001951	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP97

Fln msg: Distance to subject end: 147 aas, your sequence is shorter than subject: 70 - 359

Fln protein: MFGWRKHGLCAGGSPEARIYPCLFCSRKFYSSQALGGHQNAHKKERTAARRAQRSHMNIQQRFCSLAPSP

Protein Length: 71

Fln nts: AATGTTCGGTTGGCGAAAGCACGGGCTCTGCGCAGGGGGATCTCCGGAGGCTCGCATTTACCCATGTTTGTTTTGTTCTAGGAAGTTCTACAGTTCTCAGGCTTTGGGAGGACACCAGAATGCTCACAAGAAGGAGAGAACCGCTGCAAGAAGAGCTCAGAGATCTCATATGAACATTCAGCAGAGGTTTTGTAGCCTGGCACCCTCACCGCC

Fln Alignment:

biogeco3_mira_c9127___LCAGGSPEARIYPCLFCSRKFYSSQALGGHQNAHKKERTAARRAQRSHMNIQQRFCSLAPSP
B8LP97__________________LSAQGS-EPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGA-FQHRYISMASLP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
53	33			66	0.997476
54	33	66			0.997476
171	33		66		0.997452
172		33	66		0.997452
175	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain