SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14901

Length: 1263 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene14901

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26334	8/116
SustainPine v2.0	sp_v2.0_unigene60453	90/116
SustainPine v2.0	sp_v2.0_unigene60565	15/116
SustainPine v2.0	sp_v2.0_unigene80814	1/116

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal S4 protein [Glycine max] gb\|ACU21252.1\| unknown [Glycine max]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	nucleolus	GO:0005730	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	94%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	94%
Blast2go	chloroplast	GO:0009507	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein S4e	IPR000876	-	-
Sma3	Ribosomal protein S4e, central	IPR013845	-	-
Sma3	Ribosomal protein S4e, N-terminal	IPR013843	-	-
Sma3	Ribosomal protein S4e, N-terminal, conserved site	IPR018199	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKK9

Fln msg:

Fln protein: MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLLRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLVKANDTIKIDLETGKIKEFIKFDVGNVVMVTGGRNRGRVGTIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIDEARKRNAAATAAA*

Protein Length: 265

Fln nts: GAGGTTAAGTTTAGAGGTAAAAGCGCAACTAGGGTTTGGTAAAGGGTATAGGGTTTCAAAGAGTTAAGCCCGTGTTTGAACCCTCAAGATCCTTGATTGGCTGGGTTCATTGATTTCTGCTCCTCCTACTGAATCGATCGTAGAGGTCTTTGCCTCTGTAATTTGATTTGCAGAAGGTGCCTGGCAGGGTTTAAGGATTTCTCATTCTCCTCTTCTTGAGCCGATCGTAGAGACATC_-_ATGGCTCGTGGATTGAAGAAACATTTAAAGAGGCTCAATGCACCTAGGCATTGGATGCTTGACAAACTCGGTGGTGCTTTTGCACCAAAACCATCTCCTGGTCCTCACAAGGGGAGGGAATGCCTTCCTCTTGTTGTTCTTCTTAGGAATAGGCTGAAGTATGCTCTCACATACCGTGAAGTCATAGCCATTGTAATGCAAAGGCTTATATCTGTTGATGGAAAAGTCAGGACAGACAAATGCTATCCCGCAGGGTTTATGGATGTCCTGTCAATTGCAAAAACAAATGAGAATTTTAGGCTTCTTTATGATGCAAAGGGTCGTTTCCGCTTGCATTCAATCAAAGATGAAGAAGCAAAGTATAAACTTTGCAAGGTTCGTTCTGTACAATTTGGAGATAAGGGTATCCCTTACCTCAACACTTATGATGGACGCACAATTAGGTACCCAGATCCATTGGTGAAGGCCAATGATACAATCAAGATTGATCTAGAGACAGGCAAAATCAAGGAGTTTATCAAGTTTGATGTTGGTAATGTTGTAATGGTTACTGGAGGCCGTAACAGAGGTCGTGTTGGAACCATTAAGCACAGAGAAAAGCATAAGGGTAGCTTTGAGATTATTCATGTGCAAGATGCTGCTGGGCAGGAATTTGCCACCCGACAGGGTAATGTGTTCACTATTGGAAAAGGCACAAAGCCTTGGGTTTCTTTACCCAAGGGTAAAGGTGTCAAGCTGTCCATCATTGATGAGGCCAGGAAACGCAATGCAGCTGCAACTGCTGCAGCATAA___GTTTTGTTCATTAGAAAACTCGATAGTTTTTATGGTCAGAATTTGTTAGTTTACTCTGACTATTATCGGAAACTTTGTTGGGAAAACTTAGGAGCTACCATTGTTTTACTTCTGAACGAAAAGGGTTTTATTTTGCATTTTTAAGTGCAGCTTTGAGGTTCTACTGCTATCTAAATATTTTATTTTTGACATCAATTTTCCAGACCAGATTAAATGCAATGCAGTATATACATT

Fln Alignment:

biogeco3_mira_c9085___MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLLRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLVKANDTIKIDLETGKIKEFIKFDXXXXXXXXXXXXXXXXXXIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIDEARKRN
A9NKK9__________________MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLIRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLVKANDTIKIDLETGKIKEFIKFDVGNVVMVTGGRNRGRVGVIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIEEARKRH

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
96			25	75	0.996474
181			75	25	0.996473
372		85	14		0.993533
398	14		85		0.993533
399	85	14			0.993533
401			85	14	0.993533
447	14	85			0.993533
448	14			85	0.993533
450	85		14		0.993533
587	66		33		1.0
610	10			90	0.90298
802	6		93		0.999153
804	6	93			0.999153
805			93	6	0.999153
817	7		92		0.999532
849	91			8	0.999766
853	4		86		0.999642
856	3		87	3	0.993531
859	6			93	0.999264
879	92			8	0.999718
880			92	8	0.999718
1020		85		14	1.0
1091		10		90	0.90298
1093		90		10	0.90298
1142		22		77	0.999999
1175	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain