SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14867

Length: 224 nt

UniGene Fasta

>biog3_v1.0_unigene14867
AATGTTTCTTAGTTCCAAAAGAAACTCATTGACTTTGTTGGACTGGAAGTAAGAGTTATGTTACATCTAAGAATACGATAGAAGTCTGTCTTTACATCAGCAAGAATTTCAAAGTACGAAAATATCACATGTACTATGGTGGTGACGAAGGCTCGAGAAAATCTAACTATACAGACATGGTAAATAAATACTATGATCTGGCGACTAGTTTCTATGAGTATGGA

Ace file of the UniGene biog3_v1.0_unigene14867

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene60696	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	24-sterol C-methyltransferase n=1 Tax=Gossypium hirsutum RepID=Q2QDF7_GOSHI	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	24-sterol c-methyltransferase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sterol 24-C-methyltransferase.	EC:2.1.1.41	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Steroid biosynthesis	00100	88%
Blast2go	Biosynthesis of terpenoids and steroids	01062	88%
Blast2go	Biosynthesis of plant hormones	01070	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	88%
Blast2go	sterol biosynthetic process	GO:0016126	Biological Process	88%
Blast2go	sterol 24-C-methyltransferase activity	GO:0003838	Molecular Function	88%
Blast2go	vacuole	GO:0005773	Cellular Component	88%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRC7

Fln msg: Distance to subject end: 282 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 32 - 348

Fln protein: MYYGGDEGSRKSNYTDMVNKYYDLATSFYEYG

Protein Length: 33

Fln nts: AATGTTTCTTAGTTCCAAAAGAAACTCATTGACTTTGTTGGACTGGAAGTAAGAGTTATGTTACATCTAAGAATACGATAGAAGTCTGTCTTTACATCAGCAAGAATTTCAAAGTACGAAAATATCAC_-_ATGTACTATGGTGGTGACGAAGGCTCGAGAAAATCTAACTATACAGACATGGTAAATAAATACTATGATCTGGCGACTAGTTTCTATGAGTATGGA

Fln Alignment:

biogeco3_mira_c9003___KYHMYYGGDEGSRKSNYTDMVNKYYDLATSFYEYG
C0PRC7__________________KYHMYYGGDEDSRKSNYTDMVNKYYDLATSFYEYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain