SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14832

Length: 409 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14832
AATGTCAAAAATACAAGGAAAAATTTGGGTTCATCTTTCTGATCTGTGCCTCTGGAAGAAACACTCCTGAAATACTAGATGCTTTAAAGAAACGCTTTGGAAATAGACCTATAGTCGAGCTTGAAATTGCAGCAGGGGAACAACAGAAGATAACTGAGCTGCGGCTCGCCAAACTCTTTGCTGAGAAAGGAAGCAGCACTACTCAAACAGTCACTGCATTCAGCAATATTCCACCTCAGCAGTCAACAGGTTGCCGATTGAACCACATCGGGGCACATTTAATTAGTGGCTCTGAAGGGAGTGTGGAACACCGTCCTATGCTGACTTCATCCCGGACACGTCCTCCAATCACAACCCATGTTCTTGATGTTTCTCATGGCAAGCCTGGGGTAGGAATTGAAGTCACATT

Ace file of the UniGene biog3_v1.0_unigene14832 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25193	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	5-hydroxyisourate hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7T3Z8_VITVI	-	-	55%
FL-Next	sp=Uric acid degradation bifunctional protein TTL; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	5-hydroxyisourate hydrolase	-	-	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydroxyisourate hydrolase.	EC:3.5.2.17	-	0.0	64%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	64%
Blast2go	Metabolic pathways	01100		0.0	64%

Source	GOs	Term	Type	Identity
Blast2go	allantoin biosynthetic process	GO:0019428	Biological Process	64%
Blast2go	regulation of cell growth by extracellular stimulus	GO:0001560	Biological Process	64%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	64%
Blast2go	protein homotetramerization	GO:0051289	Biological Process	64%
Blast2go	protein binding	GO:0005515	Molecular Function	64%
Blast2go	hydroxyisourate hydrolase activity	GO:0033971	Molecular Function	64%
Blast2go	cytosol	GO:0005829	Cellular Component	64%
Blast2go	extrinsic to internal side of plasma membrane	GO:0031234	Cellular Component	64%
Blast2go	peroxisome	GO:0005777	Cellular Component	64%
Blast2go	2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	GO:0051997	Biological Process	64%

Source	InterPros	Term	Type	Identity
Sma3	Transthyretin/hydroxyisourate hydrolase	IPR000895	-	-
Sma3	Hydroxyisourate hydrolase	IPR014306	-	-
Sma3	Bifunctional hydroxyisourate hydrolase/2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase	IPR017129	-	-
Sma3	Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase	IPR018020	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LVM5

Fln msg: Distance to subject end: 98 aas, your sequence is shorter than subject: 135 - 324

Fln protein: CQKYKEKFGFIFLICASGRNTPEILDALKKRFGNRPIVELEIAAGEQQKITELRLAKLFAEKGSSTTQTVTAFSNIPPQQSTGCRLNHIGAHLISGSEGSVEHRPMLTSSRTRPPITTHVLDVSHGKPGVGIEVT

Protein Length: 136

Fln nts: AATGTCAAAAATACAAGGAAAAATTTGGGTTCATCTTTCTGATCTGTGCCTCTGGAAGAAACACTCCTGAAATACTAGATGCTTTAAAGAAACGCTTTGGAAATAGACCTATAGTCGAGCTTGAAATTGCAGCAGGGGAACAACAGAAGATAACTGAGCTGCGGCTCGCCAAACTCTTTGCTGAGAAAGGAAGCAGCACTACTCAAACAGTCACTGCATTCAGCAATATTCCACCTCAGCAGTCAACAGGTTGCCGATTGAACCACATCGGGGCACATTTAATTAGTGGCTCTGAAGGGAGTGTGGAACACCGTCCTATGCTGACTTCATCCCGGACACGTCCTCCAATCACAACCCATGTTCTTGATGTTTCTCATGGCAAGCCTGGGGTAGGAATTGAAGTCACATT

Fln Alignment:

biogeco3_mira_c8884___YKEKFGFIFLICASGRNTPEILDALKKRFGNRPIVELEIAAGEQQKITELRLAKLFAEKGSSTTQTVTAFSNIPPQQSTGCRLNHIGAHLISGSEGSVEHRPMLTSSRTRPPITTHVLDVSHGKPGVGIEV
Q9LVM5__________________YKKKFGFIFIICASGRTHAEMLHALKERYENRPIVELEIAAMEQMKITELRMAKLFSDKAKVISETDS--SSSPVSTKPQDRLRIIGGHLNVAAEAK-------APKRSRPPITTHVLDVSRGAPAAGVEV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
262		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain