SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14828

Length: 228 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14828
ACCTTACAGAAGGCAAAAGAGAGAAGGTTTGTGCAGTGTTCGTGCTAGAACTGGAGAGGCCAACAGTAGGCCTTTGACAGGTGTGATCTTTGAGCCCTTCACTGAAGTGCAGAGTGAGCTTGTACAAGTGTCCAATAATTCTACTCAATCTTTTGCACGCCAGAGGTTCGCGGATGCTTGCGAAGCTGCTTTGAATGAGCAAATCAATACAGAATATAATGTCACATT

Ace file of the UniGene biog3_v1.0_unigene14828 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16953	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Ferritin n=1 Tax=Picea sitchensis RepID=B8LPN3_PICSI	-	-	85%
FL-Next	sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	ferritin 1a	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Ferritin, conserved site	IPR014034	-	-
Sma3	Ferritin/DPS protein domain	IPR008331	-	-
Sma3	Ferritin- like diiron domain	IPR009040	-	-
Sma3	Ferritin	IPR001519	-	-
Sma3	Ferritin-related	IPR012347	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPN3

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 75 - 266

Fln protein: PYRRQKREGLCSVRARTGEANSRPLTGVIFEPFTEVQSELVQVSNNSTQSFARQRFADACEAALNEQINTEYNVT

Protein Length: 76

Fln nts: ACCTTACAGAAGGCAAAAGAGAGAAGGTTTGTGCAGTGTTCGTGCTAGAACTGGAGAGGCCAACAGTAGGCCTTTGACAGGTGTGATCTTTGAGCCCTTCACTGAAGTGCAGAGTGAGCTTGTACAAGTGTCCAATAATTCTACTCAATCTTTTGCACGCCAGAGGTTCGCGGATGCTTGCGAAGCTGCTTTGAATGAGCAAATCAATACAGAATATAATGTCACATT

Fln Alignment:

biogeco3_mira_c8859___PYRRQKREGLCSVRARTGEANSRPLTGVIFEPFTEVQSELVQVSNNSTQSFARQRFADACEAALNEQINTEYNVT
B8LPN3__________________PYRRPKREGLCSVRAITGETNSKPLTGVIFEPFTEVQNELVQVSKNSTQSFARQRFEDACEAALNEQINVEYNVS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
65		66		33	0.997471
142	66			33	0.997453

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain