SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14807

Length: 253 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14807
CCATGGCGGTGGCACAGTGAAGTTTATCAGTGGTGGCTGTGGCCGTAAATGGCCTGCAATGGGAATATGCTGGGGCTTTTAGGTGTCCGCAAATCCACAGGTTTAGTTTCATCGCTCGTTTCCCTTCAAGTCTTAAGGTTGGAAAAGGGTTCTGCCCATTTGTCGCTCAGGCTTTCCCGGCTAGGGTTAAATTCAGGAGAAGTTTTTGTGCTTCACTGGCCGAGGTTAAACCCGCAGTTTCCACAATGACATT

Ace file of the UniGene biog3_v1.0_unigene14807 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11340	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana] gb\|AAF69547.1\|AC008007_22 F12M16.18 [Arabidopsis thaliana] gb\|AAL07117.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14123.1\| unknown protein [Arabidopsis thaliana] gb	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	4-methyl-5(b-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	DJ-1	IPR006287	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAF0

Fln msg: Separated hits, possible frame ERROR between 102 and 120, Distance to subject end: 390 aas, your sequence is shorter than subject: 68 - 459

Fln protein: MACNGNMLGLLGVRKSTxxxxxxxFPSSLKVGKGFCPFVAQAFPARVKFRRSFCASLAEVKPAVSTMT

Protein Length: 69

Fln nts: CCATGGCGGTGGCACAGTGAAGTTTATCAGTGGTGGCTGTGGCCGTAA_-_ATGGCCTGCAATGGGAATATGCTGGGGCTTTTAGGTGTCCGCAAATCCACAGGxxxxxxxxxxxxxxxxxxTTTCCCTTCAAGTCTTAAGGTTGGAAAAGGGTTCTGCCCATTTGTCGCTCAGGCTTTCCCGGCTAGGGTTAAATTCAGGAGAAGTTTTTGTGCTTCACTGGCCGAGGTTAAACCCGCAGTTTCCACAATGACATT

Fln Alignment:

biogeco3_mira_c8787___MACNGNMLGLLGVRKSTGxxxxxxFPSSLKVGKGFCPFVAQAFPARVKFRRSFCASLAEVKPAVSTM
D5AAF0__________________MACSGNMLGLLGVWKSTGxxxxxxFPSCLKAGKGFCPSLAQAFPATVKFRRRFCASLAEVKPAASTM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain