SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14792

Length: 908 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene14792 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15058	1/20
SustainPine v2.0	sp_v2.0_unigene24410	3/20
SustainPine v2.0	sp_v2.0_unigene80428	6/20
SustainPine v2.0	sp_v2.0_unigene81085	8/20

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01764, Lipase_3, Lipase (class 3)	-	-	2.0e-18	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	uncharacterized protein loc100788725	-	-	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRI6

Fln msg: Overlapping hits, possible frame ERROR between 684 and 608, STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 303 - 585

Fln protein: NVTMPSQQTSFDEIVQACLSEHIRYDSVLEEVLQNSIRGIRSIENSNSESPYEMGILLQLEAIGVGAQNDHAQLALRKAGETEKRYNTNVDELAIELSVIQSSMAELEWYKESCEKDDGIGYYDFFKNQDKKDIHADIYRTRLAGFWDDIIEKWEGHELPSDFESQNKWINAGNTYRKLVEPLDIAYYYRNNNNGNYLSDGRxxxxxxxxxxxxxxxxxxxxxxxxxxxQRSRGKRASLTEDSCFWAYVEEAWKELENLKQGQHQSLQCLEEFEKYVTTMNDALKISADVYFEGSRYMTWKAE

Protein Length: 304

Fln nts: AATGTGACTATGCCAAGCCAACAAACTTCTTTTGATGAGATTGTACAGGCTTGTCTTTCAGAGCACATAAGGTATGATTCTGTTTTGGAGGAGGTTTTGCAAAACTCCATAAGAGGGATACGATCAATAGAGAATTCCAATTCAGAATCCCCTTACGAGATGGGTATTTTATTGCAGCTTGAAGCTATTGGCGTTGGAGCTCAGAATGATCATGCACAGCTTGCCCTACGAAAAGCTGGAGAAACTGAAAAAAGGTATAACACAAATGTTGACGAGCTAGCTATTGAATTAAGCGTAATACAAAGTAGCATGGCAGAGCTTGAATGGTATAAAGAGAGTTGTGAAAAGGATGATGGCATCGGATATTATGATTTCTTTAAGAACCAAGACAAGAAGGATATCCATGCTGATATCTACAGGACGAGGCTCGCTGGGTTTTGGGATGACATTATTGAAAAGTGGGAAGGTCATGAGTTGCCAAGTGATTTCGAATCCCAAAATAAGTGGATAAATGCTGGCAATACATATAGAAAACTGGTAGAGCCTCTGGATATAGCATATTATTATCGCAATAACAACAATGGCAACTATCTTTCAGATGGAAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAAAGAAGCCGCGGCAAGCGTGCGTCCCTTACTGAGGACTCGTGCTTTTGGGCATATGTAGAAGAGGCTTGGAAAGAACTGGAAAATCTGAAACAAGGCCAACACCAAAGCCTACAATGTCTTGAAGAGTTTGAAAAGTATGTGACAACCATGAACGACGCTCTCAAAATTTCTGCAGATGTTTACTTCGAAGGAAGCAGATACATGACATGGAAGGCAGAAT

Fln Alignment:

biogeco3_mira_c8749___NVTMPSQQTSFDEIVQACLSEHIRYDSVLEEVLQNSIRGIRSIENSNSESPYEMGILLQLEAIGVGAQNDHAQLALRKAGETEKRYNTNVDELAIELSVIQSSMAELEWYKESCEKDDGIGYYDFFKNQDKKDIHADIYRTRLAGFWDDIIEKWEGHELPSDFESQNKWINAGNTYRKLVEPLDIA-XXXXXXXXXXYLSDGRxxxxxxxxxxxxxxxxxxxxxxxxxxxXXXXXRASLTEDSCFWAYVEEAWKELENLKQGQHQSLQCLEEFEKYVTTMNDALKISADVYFEGSRYMTWKAE
B8LRI6__________________HLTMQSQHTSFDEIVQACLLEHIRYDSVLEEVRQNSIRGIR-IAKSNSESSYEMGISSQLEAIGVGAQNDRAQLALRKAGEIENNYNENVETLAIKLSVRQSSMAELEWYKERCEKEDGSTYYDSFKKQDMKDIHANLVRVKLAEFWDEIMEMWEGHELPSDFKSQNKWINAGNTYRKLVEPLDIAHYYLTTKTNKSYFSDGRxxxxxxxxxxxxxxxxxxxxxxxxxxxKP----ASLTEDSCFWAYVEEAWKDLENLKQGQHQSLQSLEQFEKYVTTMNNALKIAPDVFLNGSNYMMWSEE

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
107	33		66		0.997457
109		66		33	0.997458
110	66		33		0.997458
172	25			75	0.996481
290	33			66	0.997476
388	25			75	0.996481
512	20			80	0.995499
513			80	20	0.995499
515	80			20	0.995499
581	20			80	0.995494
582	20	80			0.995493
584			20	80	0.995493
617	80			20	0.995493
621		80	20		0.995493
640	12		87		0.992554
642		87	12		0.992554
644		50		37	1.0
662	87	12			0.992554
668		40		60	1.0
715		28		71	1.0
729	85	14			0.993533
770		16	83		0.994512
820		42		57	1.0
833		16		83	0.994512
859		83		16	0.994513
865	80	20			0.995494
871	60		40		1.0
877			80	20	0.995496
884		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain