SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14760

Length: 267 nt

UniGene Fasta

>biog3_v1.0_unigene14760
AATGTCTTTTGTCGCCCTCAGAGCTGATATGGATGCTCTGCCCATTCAGGAGGAAATTGAGTGGGCACACAAAAGTTAGAACCCTGGGAAATGCATGCTTGTGGACATGATGCGCATAGCACCATGCTTCTCGGTGCTGCAAAGATACTGCAAGAACGCCAGCCCCTGTTACAGGGAACTGTTGTCCTAATTTTTCAACCAGCAGAGGAAGCAGGTGCTGGAGCAAAAAGAATGAATAAAAGATGGGGCATTAGAGAATGTGACATT

Ace file of the UniGene biog3_v1.0_unigene14760

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene70355	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	IAA-amino acid hydrolase ILR1-like 5 n=2 Tax=Arabidopsis RepID=ILL5_ARATH	-	-	4.0e-24	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	auxin conjugate hydrolase	-	-	1.17938e-25	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	1.17938e-25	83%
Blast2go	regulation of systemic acquired resistance	GO:0010112	Biological Process	1.17938e-25	83%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	1.17938e-25	83%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M20	IPR002933	-	-
Sma3		IPR010168	-	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	-
Sma3	Amidohydrolase	IPR017439	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVQ4

Fln msg: Overlapping hits, possible frame ERROR between 91 and 82, Distance to subject end: 244 aas, your sequence is shorter than subject: 89 - 476

Fln protein: MSFVALRADMDALPIQEEIEWAHKS*xxxxxHACGHDAHSTMLLGAAKILQERQPLLQGTVVLIFQPAEEAGAGAKRMNKRWGIRECDI

Protein Length: 90

Fln nts: AATGTCTTTTGTCGCCCTCAGAGCTGATATGGATGCTCTGCCCATTCAGGAGGAAATTGAGTGGGCACACAAAAGTTAGxxxxxxxxxxxxxxxCATGCTTGTGGACATGATGCGCATAGCACCATGCTTCTCGGTGCTGCAAAGATACTGCAAGAACGCCAGCCCCTGTTACAGGGAACTGTTGTCCTAATTTTTCAACCAGCAGAGGAAGCAGGTGCTGGAGCAAAAAGAATGAATAAAAGATGGGGCATTAGAGAATGTGACATT

Fln Alignment:

biogeco3_mira_c8658___FVALRADMDALPIQEEIEWAHKS*NxxxMHACGHDAHSTMLLGAAKILQERQPLLQGTVVLIFQPAEEAGAGAKRM
A9NVQ4__________________FVALRADMDALPIQEAVEWEHKSKSxxxMHACGHDAHVTMLLGGAKILQQRQHLLQGTVILLFQPAEESGAGSKRM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain