SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14748

Length: 299 nt

UniGene Fasta

>biog3_v1.0_unigene14748
AAAGAGCAGGCATTGAAGGCTGCGTTAGAATTGAATGTATGGGAGCTTGCGAAGGGAGCTGTTGGATATGGCCTTCCATTACTCAGCGTGCCTACCAGGCAGCGGAAATCATCGCTGCTGTTAACAGTATCGGTCGCAGTCGTATTGTACCAGAGTATAGCTTCCTGGATGCACGTGGTTTGGGAGCATTTGAAGGAAGAGACTTGAAGGATATAAGTGAAATATATGCATCAGATCTGATTTCTCCAAATCTGAAGCCACCTCCTTTTACAGATGGAACACCAAATGAGAGTGTGGCC

Ace file of the UniGene biog3_v1.0_unigene14748

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3125	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglycerate mutase-like protein [Arabidopsis thaliana] dbj\|BAB10853.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM65858.1\| unknown [Arabidopsis thaliana] gb\|AED97663.1\| phosphoglycerate mutase-like protein [Arabidopsis thaliana]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	phosphoglycerate mutase-like protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	82%
Blast2go	catalytic activity	GO:0003824	Molecular Function	82%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	82%
Blast2go	plastid	GO:0009536	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQM4

Fln msg: Distance to subject end: 85 aas, your sequence is shorter than subject: 99 - 347

Fln protein: RAGIEGCVRIECMGACEGSCWIWPSITQRAYQAAEIIAAVNSIGRSRIVPEYSFLDARGLGAFEGRDLKDISEIYASDLISPNLKPPPFTDGTPNESVA

Protein Length: 100

Fln nts: AAAGAGCAGGCATTGAAGGCTGCGTTAGAATTGAATGTATGGGAGCTTGCGAAGGGAGCTGTTGGATATGGCCTTCCATTACTCAGCGTGCCTACCAGGCAGCGGAAATCATCGCTGCTGTTAACAGTATCGGTCGCAGTCGTATTGTACCAGAGTATAGCTTCCTGGATGCACGTGGTTTGGGAGCATTTGAAGGAAGAGACTTGAAGGATATAAGTGAAATATATGCATCAGATCTGATTTCTCCAAATCTGAAGCCACCTCCTTTTACAGATGGAACACCAAATGAGAGTGTGGCC

Fln Alignment:

biogeco3_mira_c8605___IEGCVRIECMGACEGSCWIWPSITQRAYQAAEIIAAVNSIGRSRIVPEYSFLDARGLGAFEGRDLKDISEIYASDLISPNLKPPPFTDGTPNESVA
A9NQM4__________________LKAALELEAMGACEGSCWIWPSITQRAYQAAEIIAAVNNIGRSRIVPEYSFLDARGLGAFEGRDLKDINEIYASDLISPNLKPPPFTDGTPNESVA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
162	25		75		0.996473
213		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain