SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14743

Length: 394 nt

UniGene Fasta

>biog3_v1.0_unigene14743
AATGTAATCAAAGAACTAAATTTGAAGCCAATGAACTGGAAGGAACTGCTCACAGATGAACCATTTACTAAAGATGACTTGATAACGATTCAGTGTCCAAATGCTCTTGATGTAAAGGTCCTTTCAGATTTTGATCATGTGAAAAAGACTTGAAGATTGATGATGAAGAGTTGATAAAACTGAAAGAGGATCCATCATATCATATGAATCTGTCTGGAGACATTAAGCGCATGCTAAAGGAGATTGGTACAGAAAAAGCAAAGGAAATTGCATTAAATGGTGGAGGTGGTGGCAAAGCTCAAAATGAAATGGCAGCTGCTCTTGCTGCCATTCATGCTACAAAATCAGCTAAAACAAAGAAATCAGAATCAGGCACTAGAGACAAATCCAGTGG

Ace file of the UniGene biog3_v1.0_unigene14743

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13105	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	peptidylprolyl isomerase (cyclophilin)-like [Arabidopsis thaliana] gb\|AAM13295.1\| peptidylprolyl isomerase (cyclophilin)-like [Arabidopsis thaliana]	-	-	56%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase-like 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	peptidyl-prolyl cis-trans isomerase-like 2-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	79%
Blast2go	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	79%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	79%
Blast2go	protein peptidyl-prolyl isomerization	GO:0000413	Biological Process	79%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	79%
Blast2go	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	79%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FJX0

Fln msg: Separated hits, possible frame ERROR between 144 and 150, Distance to subject end: 335 aas, your sequence is shorter than subject: 131 - 595

Fln protein: NVIKELNLKPMNWKELLTDEPFTKDDLITIQCPNALDVKVLSDFDHVxxxLKIDDEELIKLKEDPSYHMNLSGDIKRMLKEIGTEKAKEIALNGGGGGKAQNEMAAALAAIHATKSAKTKKSESGTRDKSS

Protein Length: 132

Fln nts: AATGTAATCAAAGAACTAAATTTGAAGCCAATGAACTGGAAGGAACTGCTCACAGATGAACCATTTACTAAAGATGACTTGATAACGATTCAGTGTCCAAATGCTCTTGATGTAAAGGTCCTTTCAGATTTTGATCATGTGAAxxxxxxCTTGAAGATTGATGATGAAGAGTTGATAAAACTGAAAGAGGATCCATCATATCATATGAATCTGTCTGGAGACATTAAGCGCATGCTAAAGGAGATTGGTACAGAAAAAGCAAAGGAAATTGCATTAAATGGTGGAGGTGGTGGCAAAGCTCAAAATGAAATGGCAGCTGCTCTTGCTGCCATTCATGCTACAAAATCAGCTAAAACAAAGAAATCAGAATCAGGCACTAGAGACAAATCCAGTGG

Fln Alignment:

biogeco3_mira_c8578___IKELNLKPMNWKELLTDEPFTKDDLITIQCPNALDVKVLSDFDHVKxxLKIDDEELIKLKEDPSYHMNLSGDIKRMLKEIGTEKAKEIALNGGGGGKAQNEMAAALAAI
Q9FJX0__________________IKELNIKTKNWKELLTEEPFTRADLITIQNPNAVDGKVTVEFDHVKxxLKIDDEELKKMNSDPAYNINVSGDIKHMLADLGTDKAKEIALHGGGGNKARNERAAAIAAI

SNPs (tot: 3)

Position	A %	G %	T %	Probability
94	50	50		1.0
95	50		50	1.0
96	50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain