SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14724

Length: 389 nt

UniGene Fasta

>biog3_v1.0_unigene14724
AATGTAGTTATAGTCAACAGGTTCCCAAGGGGTGCCACACTACCATGGTTTAAAGGATCTATTCAGCAGGCTCCACCTCCTCACCCTAACATATTTGGCTCCTAATTCTTCCTACAAGAATGTTCACCATTATAATTCTTTTGATAATTCTGCTGTTGGCAAGTGGGTTAAGGATGGACATACTGTTCAAATAGGTATCTGATGTATATTATACTAGCTGGCAACATGACACCTCAATACAAGGTTTACAACGATTGACAAGCGAGAGGATGTTGAAAAGGGCAATTTAGTCATGTCTTGACCCTGTAACCATGTGTACAATGATGAAAAAAATACTGTGCACTTGAATATGGGTGCATATCTTGTATATAAAATTCTCTTCATTCTGC

Ace file of the UniGene biog3_v1.0_unigene14724

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12005	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative ACT domain containing protein, ACR4, with alternative splicing forms [Oryza sativa Japonica Group] gb\|ABF96587.1\| ACT domain containing protein, putative, expressed [Oryza sativa Japonica Group]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	amino acid binding	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	79%
Blast2go	amino acid binding	GO:0016597	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	MATH	IPR002083	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Protein-PII uridylyltransferase	IPR010043	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAV8

Fln msg: atg_distance in limit (1-15): atg_distance = 10, Unexpected STOP codon in 5 prime region,

Fln protein: STGSQGVPHYHGLKDLFSRLHLLTLTYLAPNSSYKNVHHYNSFDNSAVGKWVKDGHTVQIGI*

Protein Length: 64

Fln nts: AATGTAGTTATAGTCAACAGGTTCCCAAGGGGTGCCACACTACCATGGTTTAAAGGATCTATTCAGCAGGCTCCACCTCCTCACCCTAACATATTTGGCTCCTAATTCTTCCTACAAGAATGTTCACCATTATAATTCTTTTGATAATTCTGCTGTTGGCAAGTGGGTTAAGGATGGACATACTGTTCAAATAGGTATCTGA___TGTATATTATACTAGCTGGCAACATGACACCTCAATACAAGGTTTACAACGATTGACAAGCGAGAGGATGTTGAAAAGGGCAATTTAGTCATGTCTTGACCCTGTAACCATGTGTACAATGATGAAAAAAATACTGTGCACTTGAATATGGGTGCATATCTTGTATATAAAATTCTCTTCATTCTGC

Fln Alignment:

biogeco3_mira_c8534___HYHGLKDLFSRLHLLTLTYLAPNSSYKNVHHYNS
D5AAV8__________________HYHGLKDLFSRHFLLAPTYLASNSLYKNVNQYNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain