SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14702

Length: 339 nt

UniGene Fasta

>biog3_v1.0_unigene14702
CTGATGTTAAGCGGAATTGGCCCATCTCGACATCTCAAACAATTCAATATTCCTCTAGTCGTAAATTTGCCTTCAGTGGGCCAGGGGATTCAAGACAGCCCCCGTGCAACCATAACCTTGCAATCCCCTAAACCCCTGGAATTCTCGAGCATACAGGTAGTGGGTATTCTTAAAGGTTCGCATACTTACATCGAGTCACATTTCGTCCAGCCGGCTCCCAGTGTAAATGGAAGCGCATCTTCACAGCCCAAGTATATATATGCCGGAAACATATTTGAGAAGCTGGCGTTTCCATTGTCAAGGGGAGAGCTGTGGCTACGCAGCACGGATCCTCGAGAC

Ace file of the UniGene biog3_v1.0_unigene14702

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28593	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TW84_VITVI	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	mandelonitrile lyase	-	-	65%

Source	InterPros	Term	Type	Identity
Sma3	Glucose-methanol-choline oxidoreductase, N-terminal	IPR000172	-	-
Sma3	Flavin amine oxidase	IPR001613	-	-
Sma3	Glucose-methanol-choline oxidoreductase, C-terminal	IPR007867	-	-
Sma3	Glucose-methanol-choline oxidoreductase	IPR012132	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQ45

Fln msg: Distance to subject end: 143 aas, your sequence is shorter than subject: 113 - 291

Fln protein: LMLSGIGPSRHLKQFNIPLVVNLPSVGQGIQDSPRATITLQSPKPLEFSSIQVVGILKGSHTYIESHFVQPAPSVNGSASSQPKYIYAGNIFEKLAFPLSRGELWLRSTDPRD

Protein Length: 114

Fln nts: CTGATGTTAAGCGGAATTGGCCCATCTCGACATCTCAAACAATTCAATATTCCTCTAGTCGTAAATTTGCCTTCAGTGGGCCAGGGGATTCAAGACAGCCCCCGTGCAACCATAACCTTGCAATCCCCTAAACCCCTGGAATTCTCGAGCATACAGGTAGTGGGTATTCTTAAAGGTTCGCATACTTACATCGAGTCACATTTCGTCCAGCCGGCTCCCAGTGTAAATGGAAGCGCATCTTCACAGCCCAAGTATATATATGCCGGAAACATATTTGAGAAGCTGGCGTTTCCATTGTCAAGGGGAGAGCTGTGGCTACGCAGCACGGATCCTCGAGAC

Fln Alignment:

biogeco3_mira_c8459___LMLSGIGPSRHLKQFNIPLVVNLPSVGQGIQDSPRATITLQSPKPLEFSSIQVVGILKGSHTYIESH-FVQPAPS-VNGSASSQPKYIYAGNIFEKLAFPLSRGELWLRSTDPR
A9NQ45__________________LLLSGIGPSEHLKEFNIPLVLHLPLVGQGIQDSPRATVTLQSPTPMEFSSIQVVGIPKGSQIYIESSCFVLPASAGVNGSASSSPKHIYAGNIFEKLAFPLSRGELRLRSRDPR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
19	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain