SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14697

Length: 573 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14697
TTCAACACTAAAAGGCATACTTGGACTCCACCAATTTCGAAAAAGACAGACATAGTATCTGTCATGCGTTCAGTCTGGGGACAAACACACCAGTGGAGATGGGAGACCATAGTAATGGGGTTATCATTTCTCTGCCTTCTCCTCGTTACCCGCCACATTAGCAAGAAAATGCCCAGGTTATTTTGGATCTCAGCTGCTACTCCTCTGACAACTGTGATTGTGGGCAGCCTGATGGTCTTTGTAACACACGCTGACAAACATGGGGTTGCTATTGTTGGTGACCTCAAAAAGGGATTGAATCCATTGTCCATAAACCAATTTGTTTTCGAGGGTCGATATCTGCAGACCGTTTTAAAGGCGGGATTGATAACTGCCATCCTTACGCTCACTGAGGGAATTGCGATAGGTCGAACTTTTGCTCTGTTCAAAAATTACCATATCGATGGCAATAAAGAAATGATTGCCATTGGGATGATGAATATTGTGGGTTCTTGTACCTCTTGCTATATTACGACAGGTGCATTCTCGAGGTCAGCTGTGAACTACAATGCTGGCTGCAGTCAGCAGTGTCGA

Ace file of the UniGene biog3_v1.0_unigene14697 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11414	3/4
SustainPine v2.0	sp_v2.0_unigene11919	1/4

Source	Descriptions	Term	Type	Identity
AutoFact	Sulfate/bicarbonate/oxalate exchanger and transporter sat-1 n=5 Tax=Populus RepID=B9H8C3_POPTR	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	sulfate bicarbonate oxalate exchanger and transporter sat-1	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	sulfate transport	GO:0008272	Biological Process	82%
Blast2go	transmembrane transport	GO:0055085	Biological Process	82%
Blast2go	secondary active sulfate transmembrane transporter activity	GO:0008271	Molecular Function	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Sulphate anion transporter	IPR001902	-	-
Sma3	Sulphate transporter/antisigma-factor antagonist STAS	IPR002645	-	-
Sma3	Sulphate transporter	IPR011547	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Sulphate anion transporter, conserved site	IPR018045	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPQ5

Fln msg: Distance to subject end: 242 aas, your sequence is shorter than subject: 191 - 666

Fln protein: FNTKRHTWTPPISKKTDIVSVMRSVWGQTHQWRWETIVMGLSFLCLLLVTRHISKKMPRLFWISAATPLTTVIVGSLMVFVTHADKHGVAIVGDLKKGLNPLSINQFVFEGRYLQTVLKAGLITAILTLTEGIAIGRTFALFKNYHIDGNKEMIAIGMMNIVGSCTSCYITTGAFSRSAVNYNAGCSQQCR

Protein Length: 192

Fln nts: TTCAACACTAAAAGGCATACTTGGACTCCACCAATTTCGAAAAAGACAGACATAGTATCTGTCATGCGTTCAGTCTGGGGACAAACACACCAGTGGAGATGGGAGACCATAGTAATGGGGTTATCATTTCTCTGCCTTCTCCTCGTTACCCGCCACATTAGCAAGAAAATGCCCAGGTTATTTTGGATCTCAGCTGCTACTCCTCTGACAACTGTGATTGTGGGCAGCCTGATGGTCTTTGTAACACACGCTGACAAACATGGGGTTGCTATTGTTGGTGACCTCAAAAAGGGATTGAATCCATTGTCCATAAACCAATTTGTTTTCGAGGGTCGATATCTGCAGACCGTTTTAAAGGCGGGATTGATAACTGCCATCCTTACGCTCACTGAGGGAATTGCGATAGGTCGAACTTTTGCTCTGTTCAAAAATTACCATATCGATGGCAATAAAGAAATGATTGCCATTGGGATGATGAATATTGTGGGTTCTTGTACCTCTTGCTATATTACGACAGGTGCATTCTCGAGGTCAGCTGTGAACTACAATGCTGGCTGCAGTCAGCAGTGTCGA

Fln Alignment:

biogeco3_mira_c8440___SKKTDIVSVMRSVWGQTHQ-WRWETIVMGLSFLCLLLVTRHISKKMPRLFWISAATPLTTVIVGSLMVFVTHADKHGVAIVGDLKKGLNPLSINQFVFEGRYLQTVLKAGLITAILTLTEGIAIGRTFALFKNYHIDGNKEMIAIGMMNIVGSCTSCYITTGAFSRSAVNYNAGC
C0PPQ5__________________TKKTDIISVMKSVWGAVHHGWNWQTILIGVFFLIFLLTAKYIGKKNRRLFWVPAVAPLISVILATLIVYLSRSDKHGVQIVNHIKKGINPSSISQLAFSGTLLVKGVKIGFVAALIALTEGIAIGRTFAALKDYHLDGNKEMLAMGVMNVAGSLTSCYVTTGSFSRSAVNYNAGC

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
321	25			75	0.996477
324			75	25	0.996478
325		75		25	0.996481

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain